Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   A6J88_RS19405 Genome accession   NZ_CP020452
Coordinates   1054514..1055158 (-) Length   214 a.a.
NCBI ID   WP_080613727.1    Uniprot ID   -
Organism   Neisseria mucosa strain FDAARGOS_260     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1049514..1060158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J88_RS19365 (A6J88_05280) - 1050244..1050423 (-) 180 WP_003756542.1 hypothetical protein -
  A6J88_RS19370 (A6J88_05285) - 1050536..1051063 (-) 528 WP_029609809.1 phosphoribosyltransferase -
  A6J88_RS19375 (A6J88_05290) rpmF 1051223..1051402 (-) 180 WP_003744026.1 50S ribosomal protein L32 -
  A6J88_RS19380 (A6J88_05295) - 1051437..1051937 (-) 501 WP_003776445.1 YceD family protein -
  A6J88_RS19385 (A6J88_05300) - 1051992..1052582 (+) 591 WP_060975019.1 Maf family protein -
  A6J88_RS19390 (A6J88_05305) - 1052642..1053352 (+) 711 WP_060975018.1 SAM-dependent methyltransferase -
  A6J88_RS19395 (A6J88_05310) - 1053476..1054300 (-) 825 WP_039408878.1 undecaprenyl-diphosphate phosphatase -
  A6J88_RS19405 (A6J88_05320) dsbA1 1054514..1055158 (-) 645 WP_080613727.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  A6J88_RS19410 (A6J88_05325) - 1055169..1056263 (-) 1095 WP_060975016.1 SPOR domain-containing protein -
  A6J88_RS19415 (A6J88_05330) - 1056568..1056783 (+) 216 Protein_987 transposase -
  A6J88_RS19425 (A6J88_05340) comM 1057588..1059084 (-) 1497 WP_060975015.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  A6J88_RS19430 (A6J88_05345) - 1059098..1059418 (-) 321 WP_003757162.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23534.24 Da        Isoelectric Point: 9.9895

>NTDB_id=223299 A6J88_RS19405 WP_080613727.1 1054514..1055158(-) (dsbA1) [Neisseria mucosa strain FDAARGOS_260]
MKRTSKPVAVLLSLALAFSASAQAAVEGVDYTVLNKPIPQRDASKIEVLEFFGYFCIHCQNFDPVLLSYSKTFPKDVYLR
TEHVVWMPEMLGLARVAAAVNASGLKYQANPAIFKAVHEQKINLADTATFKSWAAAQKSFDSKKLIAAYDAPASLAAAKK
MQSLTETYRIDGTPDVIVGGKYRIIFSSDWANGQKIIGELINKVRQERSGKAAR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=223299 A6J88_RS19405 WP_080613727.1 1054514..1055158(-) (dsbA1) [Neisseria mucosa strain FDAARGOS_260]
ATGAAACGGACAAGCAAACCGGTAGCCGTCCTCCTCAGCCTTGCGCTTGCCTTTTCCGCAAGCGCGCAGGCTGCGGTCGA
AGGTGTGGATTACACGGTTTTGAACAAACCGATTCCACAACGAGACGCATCCAAAATCGAAGTTTTGGAATTTTTCGGCT
ATTTCTGCATACATTGCCAAAACTTTGATCCCGTCTTGCTGTCATACAGCAAAACTTTTCCGAAAGACGTTTACCTGCGT
ACCGAACACGTCGTCTGGATGCCTGAAATGTTGGGCTTGGCGCGGGTTGCCGCGGCGGTTAACGCTTCGGGTTTGAAGTA
TCAGGCAAACCCCGCTATTTTCAAAGCCGTACACGAACAGAAAATCAATTTGGCGGATACCGCCACTTTCAAAAGCTGGG
CGGCGGCACAAAAAAGCTTTGACAGCAAAAAACTGATTGCCGCATACGACGCCCCCGCCAGCCTCGCAGCCGCTAAAAAA
ATGCAAAGCCTGACCGAGACTTACCGTATCGACGGCACGCCGGACGTCATCGTCGGAGGCAAATATCGGATCATATTCAG
CAGCGATTGGGCGAATGGGCAGAAAATCATAGGCGAGCTGATTAACAAAGTCCGCCAAGAGCGTTCCGGCAAAGCCGCGC
GCTGA

Domains

Predicted by InterproScan.

DSBA-like thioredoxin domain (DSBA)

(89-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

55.676

86.449

0.481
  dsbA2 Neisseria meningitidis MC58

56.044

85.047

0.477

Multiple sequence alignment