Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   A6J85_RS10915 Genome accession   NZ_CP020450
Coordinates   2192104..2192805 (-) Length   233 a.a.
NCBI ID   WP_012000241.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2187104..2197805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS10895 (A6J85_10775) rnc 2188622..2189320 (-) 699 WP_012000242.1 ribonuclease III -
  A6J85_RS10900 (A6J85_10780) - 2189563..2189919 (-) 357 WP_008809001.1 YbaN family protein -
  A6J85_RS10905 (A6J85_10785) vicX 2189954..2190757 (-) 804 WP_048775089.1 MBL fold metallo-hydrolase Regulator
  A6J85_RS10910 (A6J85_10790) micB 2190750..2192111 (-) 1362 WP_082307766.1 cell wall metabolism sensor histidine kinase VicK Regulator
  A6J85_RS10915 (A6J85_10795) micA 2192104..2192805 (-) 702 WP_012000241.1 response regulator YycF Regulator
  A6J85_RS10920 (A6J85_10800) thrS 2193011..2194954 (-) 1944 WP_061598663.1 threonine--tRNA ligase -
  A6J85_RS11195 (A6J85_10805) - 2195046..2195417 (-) 372 WP_045773786.1 hypothetical protein -
  A6J85_RS10940 (A6J85_10815) - 2196152..2197465 (-) 1314 WP_048778536.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26817.56 Da        Isoelectric Point: 4.6297

>NTDB_id=223211 A6J85_RS10915 WP_012000241.1 2192104..2192805(-) (micA) [Streptococcus gordonii strain FDAARGOS_257]
MKKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLEVARTIRKTSNVPIIVLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEFAVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTH
REFELLYHLASHVGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=223211 A6J85_RS10915 WP_012000241.1 2192104..2192805(-) (micA) [Streptococcus gordonii strain FDAARGOS_257]
ATGAAGAAAATATTAGTTGTAGATGACGAAAAACCAATTTCAGATATTATAAAATTTAATATGGTAAAAGAGGGCTATGA
AGTTGTTACGGCTTTTGATGGTCGTGAAGCTCTTGAGATGTTTGAAGCTGAAAATCCTGATATTTTGATTTTGGATTTGA
TGTTGCCAGAATTGGACGGGCTAGAAGTAGCACGCACCATTCGGAAGACCAGTAATGTTCCAATTATTGTCCTATCGGCT
AAAGATAGTGAGTTTGATAAAGTTATCGGCCTTGAGATCGGAGCAGACGACTATGTGACTAAGCCTTTCTCTAACCGTGA
GCTCCAAGCTCGCGTCAAGGCTATTTTGCGACGTTCAGAATTTGCTGTAGATACCCAAGAAAATGAAAAGGGCTCAAATG
AGTTGACAGTGGGTGAATTGCAAATTTTACCCGATGCTTTTGTTGCCAAGAAACATGGTGAAGAGCTAGAATTAACCCAT
CGTGAGTTTGAATTACTCTACCATTTGGCTAGTCATGTTGGTCAAGTAATGACACGCGAACATCTACTAGAGACAGTTTG
GGGTTATGATTATTTTGGTGATGTACGCACTGTTGATGTGACGATTCGCCGTCTACGTGAAAAGATTGAAGATACGCCAA
GCCGACCAGAGTATATTTTAACTCGTCGTGGTGTTGGCTATTATATGAGAAACAATGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

84.12

100

0.841
  vicR Streptococcus mutans UA159

80

100

0.807
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.022

99.142

0.446
  covR Streptococcus salivarius strain HSISS4

44.105

98.283

0.433
  scnR Streptococcus mutans UA159

37.5

99.571

0.373

Multiple sequence alignment