Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC/comC1   Type   Regulator
Locus tag   A6J85_RS03875 Genome accession   NZ_CP020450
Coordinates   788978..789142 (+) Length   54 a.a.
NCBI ID   WP_080998577.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   binding to ComD; induce autophosphorylation of ComD (predicted from homology)   
Competence regulation

Genomic Context

Location: 783978..794142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS03850 (A6J85_03810) dnaA 784440..785792 (-) 1353 WP_008808037.1 chromosomal replication initiator protein DnaA -
  A6J85_RS03855 (A6J85_03815) spo0J 785996..786760 (-) 765 WP_008808036.1 ParB/RepB/Spo0J family partition protein Regulator
  A6J85_RS03860 (A6J85_03820) htrA 786826..788019 (-) 1194 WP_008808035.1 S1C family serine protease Regulator
  A6J85_RS03865 (A6J85_03825) rlmH 788213..788692 (+) 480 WP_008808034.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  A6J85_RS03875 (A6J85_03835) comC/comC1 788978..789142 (+) 165 WP_080998577.1 bacteriocin Regulator
  A6J85_RS03880 (A6J85_03840) comD/comD1 789158..790516 (+) 1359 WP_081102626.1 competence system sensor histidine kinase ComD Regulator
  A6J85_RS03885 (A6J85_03845) comE/comE2 790513..791280 (+) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator
  A6J85_RS03900 (A6J85_03860) ychF 791602..792717 (+) 1116 WP_061586345.1 redox-regulated ATPase YchF -
  A6J85_RS03905 (A6J85_03865) pth 792791..793360 (+) 570 WP_060970646.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6369.44 Da        Isoelectric Point: 11.2504

>NTDB_id=223160 A6J85_RS03875 WP_080998577.1 788978..789142(+) (comC/comC1) [Streptococcus gordonii strain FDAARGOS_257]
MKKKNKQNLLPKELQQFEILTDNKLQTVIGGSQKGVYASQRSFVPSWFRKIFRN

Nucleotide


Download         Length: 165 bp        

>NTDB_id=223160 A6J85_RS03875 WP_080998577.1 788978..789142(+) (comC/comC1) [Streptococcus gordonii strain FDAARGOS_257]
ATGAAAAAGAAAAACAAACAAAATTTATTGCCAAAAGAGTTACAACAATTTGAAATTTTGACAGATAATAAACTTCAAAC
AGTCATTGGGGGATCTCAAAAAGGTGTTTATGCCAGTCAGAGATCATTTGTTCCAAGTTGGTTCCGTAAAATTTTTAGAA
ATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC/comC1 Streptococcus gordonii str. Challis substr. CH1

55.556

100

0.556
  comC/comC2 Streptococcus gordonii strain NCTC7865

81.25

59.259

0.481

Multiple sequence alignment