Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   A6J85_RS03855 Genome accession   NZ_CP020450
Coordinates   785996..786760 (-) Length   254 a.a.
NCBI ID   WP_008808036.1    Uniprot ID   A0AB35FR66
Organism   Streptococcus gordonii strain FDAARGOS_257     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 780996..791760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J85_RS03835 (A6J85_03795) - 782408..782926 (+) 519 WP_020992856.1 YehR family protein -
  A6J85_RS03840 (A6J85_03800) - 782945..783148 (-) 204 WP_008808039.1 DUF951 domain-containing protein -
  A6J85_RS03845 (A6J85_03805) dnaN 783148..784284 (-) 1137 WP_008808038.1 DNA polymerase III subunit beta -
  A6J85_RS03850 (A6J85_03810) dnaA 784440..785792 (-) 1353 WP_008808037.1 chromosomal replication initiator protein DnaA -
  A6J85_RS03855 (A6J85_03815) spo0J 785996..786760 (-) 765 WP_008808036.1 ParB/RepB/Spo0J family partition protein Regulator
  A6J85_RS03860 (A6J85_03820) htrA 786826..788019 (-) 1194 WP_008808035.1 S1C family serine protease Regulator
  A6J85_RS03865 (A6J85_03825) rlmH 788213..788692 (+) 480 WP_008808034.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  A6J85_RS03875 (A6J85_03835) comC/comC1 788978..789142 (+) 165 WP_080998577.1 bacteriocin Regulator
  A6J85_RS03880 (A6J85_03840) comD/comD1 789158..790516 (+) 1359 WP_081102626.1 competence system sensor histidine kinase ComD Regulator
  A6J85_RS03885 (A6J85_03845) comE/comE2 790513..791280 (+) 768 WP_008808031.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29327.08 Da        Isoelectric Point: 9.6391

>NTDB_id=223158 A6J85_RS03855 WP_008808036.1 785996..786760(-) (spo0J) [Streptococcus gordonii strain FDAARGOS_257]
MENYQYILIKDIHTNPYQPRKDFSIEKLNELANSIKENGLIQPIIVRKSSIIGYELLAGERRFRAAKIAGLTEIPALVKS
LSDDEMMKQAIIENLQREDLNPIEEAESYQHLIYKGLTHDEIAQIMGKSRPYITNLVRLLQLPDFVLKAVKEGRISQAHA
RLLIKLKEKDQKKWLEKIISSDISVRKLEKLLQTSTTKPKSENVQKIFIEEEEENLKKLLGVDVKISLSKKQTGKISISF
SNQEEYERIINSLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=223158 A6J85_RS03855 WP_008808036.1 785996..786760(-) (spo0J) [Streptococcus gordonii strain FDAARGOS_257]
ATGGAAAATTATCAATATATTTTAATTAAAGATATTCACACCAACCCCTATCAACCAAGAAAAGATTTTTCAATAGAGAA
ATTAAACGAGTTAGCAAATTCTATTAAAGAAAACGGATTAATTCAGCCTATTATCGTCAGGAAATCATCTATCATTGGAT
ACGAACTTTTAGCTGGGGAAAGAAGATTTAGGGCAGCTAAAATAGCAGGCTTAACTGAAATTCCTGCCTTAGTCAAATCA
CTAAGCGATGATGAAATGATGAAGCAGGCTATTATTGAAAATCTTCAAAGAGAGGATCTCAATCCAATAGAAGAAGCTGA
ATCTTATCAACATCTTATTTACAAGGGGTTAACGCATGATGAAATCGCTCAGATTATGGGGAAATCAAGGCCTTATATTA
CAAATCTTGTTCGCTTGCTACAGTTACCTGATTTTGTCTTAAAAGCTGTAAAAGAAGGTCGTATTTCTCAGGCTCATGCT
CGATTACTAATAAAACTTAAGGAAAAAGACCAGAAAAAATGGCTTGAAAAAATTATTTCTTCAGATATTTCTGTTAGAAA
ATTAGAGAAATTATTACAAACTTCTACTACTAAGCCTAAGTCTGAAAATGTCCAAAAAATTTTTATCGAAGAAGAAGAAG
AAAATCTAAAGAAATTATTGGGAGTTGATGTAAAGATTAGTCTCTCTAAGAAACAAACTGGCAAAATCTCAATTTCTTTT
TCTAATCAGGAAGAATATGAAAGAATTATTAACAGTCTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.331

100

0.543

Multiple sequence alignment