Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   A6J72_RS07590 Genome accession   NZ_CP020433
Coordinates   1511890..1513386 (+) Length   498 a.a.
NCBI ID   WP_082312136.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506890..1518386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS07580 (A6J72_07575) amiA3 1507364..1509340 (+) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator
  A6J72_RS07585 (A6J72_07580) amiA3 1509537..1511516 (+) 1980 WP_082312135.1 peptide ABC transporter substrate-binding protein Regulator
  A6J72_RS07590 (A6J72_07585) amiC 1511890..1513386 (+) 1497 WP_082312136.1 ABC transporter permease Regulator
  A6J72_RS07595 (A6J72_07590) amiD 1513386..1514312 (+) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  A6J72_RS07600 (A6J72_07595) amiE 1514321..1515388 (+) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07605 (A6J72_07600) amiF 1515399..1516322 (+) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  A6J72_RS07610 (A6J72_07605) - 1516449..1517267 (+) 819 WP_082312137.1 Cof-type HAD-IIB family hydrolase -
  A6J72_RS07615 (A6J72_07610) - 1517353..1518318 (-) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55926.11 Da        Isoelectric Point: 10.0131

>NTDB_id=223022 A6J72_RS07590 WP_082312136.1 1511890..1513386(+) (amiC) [Streptococcus intermedius strain FDAARGOS_233]
MKKYIFMRILRSLVSIFMVTTLTYTIIYTMVPRKLIFKQDPNYNKIATTPDKKTNYENTIFERMGYIDYYDTKELQEKAS
KENPSVTVEPTNANKKIYEAYIKKLGRGWKLQQFKESKQFYATREVPVYERVLGFYGNLIQIDHTGAVKDASNPNLKRYL
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFIHQNFIRLNLGTSYPTYANLPVLQVISQGQGQTQTSEVQFPTGKKTSSV
NIYTRTYKSPKHADVRDVANYGKDDPYTATESNYQYPSMLVSSSIVGLIGLALSYLIAVPLGSYMARFKNTLFDSISTGA
LTFLMSLPTIALVYIIRLIGSAIGLPDSFPILGAGDWRSYVLPAVILGLLSAPWTAVWIRRYMIDLQSQDFVRFARAKGL
SEQEISNKHIFKNAMVPLVSSIPGAIIGVITGATLTETIFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCLSIFALLLGD
ILMTMLDPRIKLTSKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=223022 A6J72_RS07590 WP_082312136.1 1511890..1513386(+) (amiC) [Streptococcus intermedius strain FDAARGOS_233]
ATGAAGAAATATATTTTTATGCGTATCTTACGCTCTTTAGTATCTATTTTCATGGTAACAACATTGACTTACACCATTAT
CTATACTATGGTGCCAAGAAAGTTGATTTTTAAACAGGATCCAAACTATAATAAAATAGCTACAACTCCTGATAAAAAGA
CTAATTATGAAAATACAATTTTTGAGCGTATGGGTTACATTGACTACTATGATACGAAGGAATTACAAGAAAAAGCTAGT
AAAGAGAATCCTTCTGTAACAGTAGAACCTACTAATGCAAATAAAAAAATCTATGAAGCTTACATCAAAAAGTTGGGGCG
TGGTTGGAAATTGCAGCAATTCAAAGAAAGTAAGCAATTTTATGCAACTCGAGAGGTTCCGGTTTATGAACGCGTTCTTG
GTTTCTATGGTAATTTGATTCAAATTGATCATACAGGGGCTGTGAAAGATGCTTCTAATCCAAACTTGAAGCGTTATCTT
CGTATTGAAAATGATCCTGCTATTGGTTGGTCTGTTGTTGGTTCTGGAACGAAACATAAATACTTGTTATATTTCAACAG
TCAATTTCCATTTATCCATCAAAATTTTATAAGATTAAATTTGGGAACATCTTATCCAACCTATGCAAATCTCCCTGTTC
TACAAGTTATTTCACAAGGGCAAGGTCAAACGCAGACTTCAGAAGTTCAATTTCCAACAGGAAAGAAAACATCGTCTGTT
AATATTTACACGCGTACCTATAAGTCTCCAAAACACGCTGATGTGCGAGATGTTGCTAATTACGGGAAAGACGATCCTTA
TACAGCAACAGAAAGCAACTATCAGTATCCATCAATGCTTGTAAGTTCTTCAATTGTTGGTTTGATTGGTCTAGCATTGT
CTTACTTAATCGCTGTGCCGTTAGGCTCTTATATGGCTCGTTTTAAGAATACATTGTTTGACAGTATTTCAACTGGTGCT
TTGACTTTCTTAATGTCGCTGCCAACTATTGCTTTGGTTTATATCATTCGCTTGATTGGTTCAGCAATAGGATTGCCAGA
CTCCTTCCCTATTTTAGGTGCAGGAGATTGGCGTTCTTATGTGTTGCCAGCAGTCATTCTTGGACTGTTGAGTGCGCCTT
GGACTGCTGTTTGGATTCGCCGTTATATGATTGACCTGCAATCACAAGACTTTGTTCGTTTTGCTCGGGCAAAAGGTCTC
TCTGAACAAGAAATTTCAAATAAACATATTTTTAAAAACGCTATGGTACCACTTGTATCCAGCATACCTGGTGCTATTAT
TGGAGTTATCACAGGTGCAACCTTGACTGAAACAATTTTTGCTTTCCCTGGAATGGGTAAAATGCTGATTGACTCTGTCA
AAGCATCTAATAATTCTATGGTCGTTGGTCTTGTATTTATCTTTACATGTCTATCTATCTTTGCTCTTCTATTGGGTGAT
ATTCTGATGACCATGCTTGACCCACGTATTAAATTAACATCAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

80.321

100

0.803
  amiC Streptococcus thermophilus LMG 18311

79.317

100

0.793
  amiC Streptococcus thermophilus LMD-9

79.116

100

0.791

Multiple sequence alignment