Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   A6J72_RS07580 Genome accession   NZ_CP020433
Coordinates   1507364..1509340 (+) Length   658 a.a.
NCBI ID   WP_003076197.1    Uniprot ID   A0AAD1FJY5
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502364..1514340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS07555 (A6J72_07550) tig 1502392..1503675 (+) 1284 WP_082312132.1 trigger factor -
  A6J72_RS07560 (A6J72_07555) rpoE 1503913..1504500 (+) 588 WP_003074392.1 DNA-directed RNA polymerase subunit delta -
  A6J72_RS07565 (A6J72_07560) - 1504743..1506353 (+) 1611 WP_082312133.1 CTP synthase -
  A6J72_RS07575 (A6J72_07570) - 1506516..1507205 (+) 690 WP_003074396.1 B3/4 domain-containing protein -
  A6J72_RS07580 (A6J72_07575) amiA3 1507364..1509340 (+) 1977 WP_003076197.1 peptide ABC transporter substrate-binding protein Regulator
  A6J72_RS07585 (A6J72_07580) amiA3 1509537..1511516 (+) 1980 WP_082312135.1 peptide ABC transporter substrate-binding protein Regulator
  A6J72_RS07590 (A6J72_07585) amiC 1511890..1513386 (+) 1497 WP_082312136.1 ABC transporter permease Regulator
  A6J72_RS07595 (A6J72_07590) amiD 1513386..1514312 (+) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72211.02 Da        Isoelectric Point: 9.2806

>NTDB_id=223020 A6J72_RS07580 WP_003076197.1 1507364..1509340(+) (amiA3) [Streptococcus intermedius strain FDAARGOS_233]
MKKGKIIAVAGLALLTSGLLAACSGSKSNSAETKFGYVYSGDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVKVDKIKLAYYDGQDQDSLARNFKDGAYSYARLFPTSSNFATFEKQFKDNIYTAEAGAGTAALALNIDRQSYKHTAKK
TDEQKNSTKKALLNKDFRQALNFALDRESYAAQVNGKAGAATAIRNMFVPSNFVQVGEKSFGDAVEEKLASYGDTWKGVK
LADSQNGLYNPTKAKEKFAKAKAALQAQGVQFPIHLDVPTVETSKSYVARMQSLKQSVEKVLGKENVVMDLNMMSEDDFN
NITYYAPNAAGEDWDISGAVGWSPDYQDPSTYLDILKSTASDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSLTYYKYIKVGKDAVTKKDYEAAKKKWQK
EKAESNKKAQDKLADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=223020 A6J72_RS07580 WP_003076197.1 1507364..1509340(+) (amiA3) [Streptococcus intermedius strain FDAARGOS_233]
ATGAAAAAAGGTAAAATCATCGCAGTTGCGGGGTTAGCTCTTTTAACTTCTGGCCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAACTCCGCTGAAACCAAGTTCGGTTATGTGTATTCTGGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACTACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGTGAAGAGTATGCTGAAGTCAAGGCGCAAGATTTTGTAACTGGACTGAAACATGCTGCCGATAAAAAATCTGAAGCTC
TTTATTTGGTTCAAAATTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGATTTTTCAACAGTAGGTGTG
AAAGCAGTTGATGACTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCCAAGACCACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGATCCTAATTCTATCCTTT
ATAATGGGCCATTCCTGATGAAAGCTATCACAGCGAAATCTGCAGTAGAATATGTTAAAAATAAACATTATTGGGATAAA
GATAAAGTAAAAGTTGATAAGATTAAACTTGCTTACTATGATGGTCAAGACCAAGACTCTCTTGCGCGTAACTTTAAAGA
TGGAGCTTACTCTTATGCTCGTCTCTTCCCAACAAGCTCAAACTTTGCAACTTTTGAAAAGCAGTTCAAAGATAATATCT
ATACTGCAGAAGCAGGTGCAGGAACAGCAGCTTTAGCATTGAATATCGATCGTCAATCATACAAGCATACTGCCAAAAAG
ACAGATGAGCAAAAGAATTCAACGAAAAAAGCATTGTTGAACAAAGACTTCCGCCAAGCTCTAAACTTTGCACTGGATCG
TGAATCTTACGCAGCACAAGTCAATGGTAAAGCTGGAGCTGCCACAGCAATCCGCAATATGTTTGTGCCATCTAACTTTG
TTCAAGTTGGTGAAAAATCATTTGGTGATGCTGTAGAAGAAAAATTAGCGAGCTATGGTGATACATGGAAGGGTGTTAAA
CTAGCTGATTCACAAAACGGCTTGTACAATCCAACAAAAGCAAAAGAAAAATTTGCAAAAGCAAAAGCAGCTTTGCAAGC
TCAAGGTGTACAGTTCCCAATCCACTTAGATGTTCCTACTGTGGAAACTTCTAAGAGCTATGTTGCTCGGATGCAGTCTT
TAAAACAATCTGTTGAAAAAGTACTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGACGACTTTAAT
AACATCACTTACTATGCTCCAAACGCAGCTGGAGAAGACTGGGATATTTCAGGTGCTGTTGGTTGGAGTCCTGATTATCA
AGATCCATCTACTTATCTTGATATTTTGAAATCAACGGCTTCTGACAATACGAAGACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTTGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTTAA
CCTACTATAAATACATTAAAGTCGGTAAAGATGCTGTCACGAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAGGCCGAATCTAATAAAAAAGCTCAAGATAAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

63.885

100

0.64
  amiA3 Streptococcus thermophilus LMG 18311

63.581

100

0.637
  amiA Streptococcus salivarius strain HSISS4

62.614

100

0.626

Multiple sequence alignment