Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   A6J72_RS07595 Genome accession   NZ_CP020433
Coordinates   1513386..1514312 (+) Length   308 a.a.
NCBI ID   WP_003074404.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1508386..1519312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS07585 (A6J72_07580) amiA3 1509537..1511516 (+) 1980 WP_082312135.1 peptide ABC transporter substrate-binding protein Regulator
  A6J72_RS07590 (A6J72_07585) amiC 1511890..1513386 (+) 1497 WP_082312136.1 ABC transporter permease Regulator
  A6J72_RS07595 (A6J72_07590) amiD 1513386..1514312 (+) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  A6J72_RS07600 (A6J72_07595) amiE 1514321..1515388 (+) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07605 (A6J72_07600) amiF 1515399..1516322 (+) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  A6J72_RS07610 (A6J72_07605) - 1516449..1517267 (+) 819 WP_082312137.1 Cof-type HAD-IIB family hydrolase -
  A6J72_RS07615 (A6J72_07610) - 1517353..1518318 (-) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34489.54 Da        Isoelectric Point: 9.8589

>NTDB_id=223023 A6J72_RS07595 WP_003074404.1 1513386..1514312(+) (amiD) [Streptococcus intermedius strain FDAARGOS_233]
MATIDKSKFTFVKRDDFASEIIDAPAYSYWKSVMRQFLRKKSTIAMLGILVAIVLMSFIYPIFSNFDFNDVSKVNDFSAR
YIKPNAQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRVMIEIYNIISNIPPLLIVIV
LTYSIGAGFWNLIFAMTITGWIGIAYNIRIQILRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=223023 A6J72_RS07595 WP_003074404.1 1513386..1514312(+) (amiD) [Streptococcus intermedius strain FDAARGOS_233]
ATGGCTACAATTGATAAAAGTAAGTTCACATTTGTAAAACGCGATGATTTTGCCTCTGAAATAATTGATGCACCAGCTTA
TTCTTACTGGAAATCTGTTATGCGTCAATTCTTAAGGAAAAAATCAACAATTGCTATGTTGGGTATTCTTGTTGCAATTG
TTTTGATGAGTTTCATCTATCCGATTTTTTCAAATTTCGATTTTAATGATGTAAGTAAAGTAAATGATTTTAGTGCTCGT
TATATCAAACCGAATGCCCAATATTGGTTTGGTACAGATAGTAACGGGAAATCCCTCTTTGACGGAGTGTGGTTTGGAGC
ACGTAACTCTATTCTTATTTCAGTTATTGCAACCGTGATTAACCTTGTGATTGGTATTGTTATTGGTGGCATCTGGGGAA
TTTCAAAAACTGTCGATCGTGTGATGATTGAGATTTATAATATTATTTCTAACATCCCACCGCTTTTGATTGTCATTGTC
TTGACGTACTCAATCGGTGCAGGTTTCTGGAATTTGATTTTTGCCATGACGATTACTGGTTGGATTGGGATTGCTTACAA
CATTCGTATCCAAATTCTACGTTATCGTGATTTAGAATACAACCTCGCCAGTCGTACCTTGGGAACACCAACGCTTAAAA
TTATTGTGAAAAATATTATGCCACAATTGGTTTCTGTCATTGTGACTACTGCTTCACAATTACTACCAAGTTTCATTTCA
TACGAAGCCTTTCTATCTTTCTTTGGTTTGGGGCTTCCTGTGACGGTGCCAAGTTTAGGGCGTTTGATTTCAGATTATTC
ACAAAACGTTACAACAAATGCATATCTTTTCTGGATTCCATTGACAACTTTAATCTTGGTTTCCCTTTCATTATTCGTTG
TCGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

86.039

100

0.86
  amiD Streptococcus thermophilus LMG 18311

83.442

100

0.834
  amiD Streptococcus thermophilus LMD-9

83.442

100

0.834

Multiple sequence alignment