Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   A6J72_RS07605 Genome accession   NZ_CP020433
Coordinates   1515399..1516322 (+) Length   307 a.a.
NCBI ID   WP_003074407.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510399..1521322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS07590 (A6J72_07585) amiC 1511890..1513386 (+) 1497 WP_082312136.1 ABC transporter permease Regulator
  A6J72_RS07595 (A6J72_07590) amiD 1513386..1514312 (+) 927 WP_003074404.1 oligopeptide ABC transporter permease OppC Regulator
  A6J72_RS07600 (A6J72_07595) amiE 1514321..1515388 (+) 1068 WP_009569325.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07605 (A6J72_07600) amiF 1515399..1516322 (+) 924 WP_003074407.1 ATP-binding cassette domain-containing protein Regulator
  A6J72_RS07610 (A6J72_07605) - 1516449..1517267 (+) 819 WP_082312137.1 Cof-type HAD-IIB family hydrolase -
  A6J72_RS07615 (A6J72_07610) - 1517353..1518318 (-) 966 WP_003074411.1 LacI family DNA-binding transcriptional regulator -
  A6J72_RS07620 (A6J72_07615) - 1518299..1519753 (-) 1455 WP_082312138.1 sucrose-6-phosphate hydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34811.89 Da        Isoelectric Point: 6.1198

>NTDB_id=223025 A6J72_RS07605 WP_003074407.1 1515399..1516322(+) (amiF) [Streptococcus intermedius strain FDAARGOS_233]
MSEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGDIFFDGKRINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERQKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKDLGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDADQHDYSVDKPEMVEIRPGHFVWANKAEVEKYNKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=223025 A6J72_RS07605 WP_003074407.1 1515399..1516322(+) (amiF) [Streptococcus intermedius strain FDAARGOS_233]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTCGGAGAAGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCGCTTGTAGGAGAGTCCGGTTCTGGTAAAACAACAATCGGACGCG
CGATTATTGGTTTGAATAATACTAGTAAGGGAGATATCTTCTTTGATGGAAAAAGAATCAATGGTAAGAAATCAAAAGAA
GAAGAATCAGAAATCATTCGCAAAATTCAGATGATTTTCCAAGATCCTGCTGCTAGTTTGAATGAACGTGCGACGGTTGA
TTACATTATTTCAGAAGGTCTGTATAATTTTCATCTGTTTAAAGATGAAGAAGAACGTCAGAAAAAAGTAAAAGATATTA
TTCATGAGGTAGGGCTGTTGTCAGAGCATTTAACTCGCTATCCGCATGAATTCTCAGGTGGTCAGCGTCAGCGGATTGGG
ATTGCTCGTGCGCTTGTTATGGAACCAGACTTTGTGATTGCCGATGAGCCAATTTCAGCACTTGACGTGTCTGTTCGTGC
TCAAGTTTTAAATCTTCTTAAGAAATTCCAAAAAGATCTGGGCTTGACCTATCTTTTCATTGCTCATGACCTTTCTGTAG
TGCGTTTTATCTCAGATCGGATTGCTGTTATTTATAAGGGAGTGATTGTTGAAGTTGCTGAAACCGAAGAACTCTTCAAT
AATCCAATCCATCCTTATACTCAGTCTTTATTGTCAGCTGTCCCAATTCCGGATCCGATTTTGGAACGGAAGAAAGTGTT
GAAAGTCTACGATGCTGATCAACATGATTATTCAGTAGATAAGCCAGAAATGGTTGAAATTCGTCCGGGGCACTTTGTCT
GGGCTAATAAAGCAGAAGTTGAAAAGTATAATAAGGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus salivarius strain HSISS4

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86

Multiple sequence alignment