Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C2I05_RS19235 Genome accession   NZ_CP026039
Coordinates   3627942..3628391 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PK1_2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3622942..3633391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS19195 (C2I05_19170) ctaE 3622959..3623582 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  C2I05_RS19200 (C2I05_19175) ctaF 3623585..3623917 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C2I05_RS19205 (C2I05_19180) ctaG 3623945..3624838 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  C2I05_RS19210 (C2I05_19185) ylbA 3624870..3625232 (-) 363 WP_003232238.1 YugN family protein -
  C2I05_RS19215 (C2I05_19190) ylbB 3625372..3625818 (+) 447 WP_003221362.1 CBS domain-containing protein -
  C2I05_RS19220 (C2I05_19195) ylbC 3625902..3626942 (+) 1041 WP_120028059.1 CAP domain-containing protein -
  C2I05_RS19225 (C2I05_19200) ylbD 3627173..3627571 (+) 399 WP_120028060.1 YlbD family protein -
  C2I05_RS19230 (C2I05_19205) ylbE 3627587..3627826 (+) 240 WP_003232231.1 YlbE-like family protein -
  C2I05_RS19235 (C2I05_19210) ylbF 3627942..3628391 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2I05_RS19240 (C2I05_19215) ylbG 3628446..3628718 (+) 273 WP_009967171.1 YlbG family protein -
  C2I05_RS19245 (C2I05_19220) rsmD 3629041..3629595 (+) 555 WP_120028061.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2I05_RS19250 (C2I05_19225) coaD 3629600..3630085 (+) 486 WP_120028062.1 pantetheine-phosphate adenylyltransferase -
  C2I05_RS19255 (C2I05_19230) spoVV 3630096..3631322 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  C2I05_RS19260 (C2I05_19235) ylbK 3631503..3632285 (+) 783 WP_003232221.1 patatin family protein -
  C2I05_RS19265 (C2I05_19240) sepM 3632287..3633312 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=223025 C2I05_RS19235 WP_003221370.1 3627942..3628391(+) (ylbF) [Bacillus subtilis strain PK1_2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=223025 C2I05_RS19235 WP_003221370.1 3627942..3628391(+) (ylbF) [Bacillus subtilis strain PK1_2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAATGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment