Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   C2I05_RS13370 Genome accession   NZ_CP026039
Coordinates   2525467..2525901 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain PK1_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2520467..2530901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS13340 (C2I05_13325) ydaD 2521112..2521972 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  C2I05_RS13345 (C2I05_13330) lyxE 2521988..2522491 (+) 504 WP_120027785.1 D-lyxose ketol-isomerase -
  C2I05_RS13350 (C2I05_13335) ydaF 2522578..2523129 (+) 552 WP_003234398.1 GNAT family protein -
  C2I05_RS13355 (C2I05_13340) ydaG 2523207..2523629 (+) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  C2I05_RS13360 (C2I05_13345) amj 2524137..2524946 (+) 810 WP_015715258.1 lipid II flippase Amj -
  C2I05_RS13365 (C2I05_13350) ydzA 2524991..2525281 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  C2I05_RS13370 (C2I05_13355) lrpC 2525467..2525901 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  C2I05_RS13375 (C2I05_13360) topB 2525966..2528149 (+) 2184 WP_038827751.1 DNA topoisomerase III -
  C2I05_RS13380 (C2I05_13365) epsJ 2528352..2529440 (+) 1089 WP_064671960.1 hypothetical protein -
  C2I05_RS13385 (C2I05_13370) epsK 2529421..2530272 (+) 852 WP_120027786.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=222984 C2I05_RS13370 WP_003246585.1 2525467..2525901(+) (lrpC) [Bacillus subtilis strain PK1_2]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=222984 C2I05_RS13370 WP_003246585.1 2525467..2525901(+) (lrpC) [Bacillus subtilis strain PK1_2]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAATGCGGATTACGAGCGA
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment