Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | TLL_RS12400 | Genome accession | NC_004113 |
| Coordinates | 2553189..2553551 (-) | Length | 120 a.a. |
| NCBI ID | WP_164921050.1 | Uniprot ID | - |
| Organism | Thermosynechococcus vestitus BP-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2548189..2558551
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| TLL_RS12375 (tlr2433) | - | 2548551..2549306 (+) | 756 | WP_011058265.1 | MBL fold metallo-hydrolase | - |
| TLL_RS12380 (tlr2434) | - | 2549309..2549800 (+) | 492 | WP_011058266.1 | phosphate-starvation-inducible PsiE family protein | - |
| TLL_RS12385 (tll2435) | - | 2549777..2550637 (-) | 861 | WP_164921244.1 | prephenate/arogenate dehydrogenase | - |
| TLL_RS12390 (tlr2436) | - | 2550795..2551922 (+) | 1128 | WP_011058268.1 | HhoA/HhoB/HtrA family serine endopeptidase | - |
| TLL_RS12395 (tlr2437) | - | 2551924..2553186 (+) | 1263 | WP_011058269.1 | phospholipid carrier-dependent glycosyltransferase | - |
| TLL_RS12400 (tll2438) | pilH | 2553189..2553551 (-) | 363 | WP_164921050.1 | response regulator transcription factor | Machinery gene |
| TLL_RS12405 (tll2439) | - | 2553674..2554528 (-) | 855 | WP_011058271.1 | energy-coupling factor ABC transporter ATP-binding protein | - |
| TLL_RS12410 (tll2440) | cbiQ | 2554530..2555321 (-) | 792 | WP_011058272.1 | cobalt ECF transporter T component CbiQ | - |
| TLL_RS12415 (tll2441) | - | 2555322..2555624 (-) | 303 | WP_011058273.1 | energy-coupling factor ABC transporter substrate-binding protein | - |
| TLL_RS12420 (tll2442) | - | 2555729..2556514 (-) | 786 | WP_231833789.1 | energy-coupling factor ABC transporter permease | - |
| TLL_RS12425 (tlr2443) | - | 2556746..2557051 (+) | 306 | WP_011058275.1 | cell division protein SepF | - |
| TLL_RS12430 | - | 2557064..2557450 (+) | 387 | WP_164921051.1 | hypothetical protein | - |
| TLL_RS12435 (tll2444) | recF | 2557389..2558528 (-) | 1140 | WP_011058276.1 | DNA replication/repair protein RecF | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13415.67 Da Isoelectric Point: 4.3961
>NTDB_id=22243 TLL_RS12400 WP_164921050.1 2553189..2553551(-) (pilH) [Thermosynechococcus vestitus BP-1]
MATIMVVDDSPTLRAMIVELMKEQGYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAVSQKVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELVASVKQLLG
MATIMVVDDSPTLRAMIVELMKEQGYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYELCRWIKGEAVSQKVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELVASVKQLLG
Nucleotide
Download Length: 363 bp
>NTDB_id=22243 TLL_RS12400 WP_164921050.1 2553189..2553551(-) (pilH) [Thermosynechococcus vestitus BP-1]
ATGGCCACAATTATGGTTGTTGATGACAGTCCCACTCTGCGGGCAATGATTGTTGAACTCATGAAAGAGCAAGGCTACGA
CGTTGTTGAGGCCGAAGATGGCATCGAAGCTCAGGAAAAAATCAAAGCCCAATGCCCTGACCTGGTGATTCTAGACGTCG
TGATGCCGCGCATGAATGGTTATGAACTCTGCCGCTGGATTAAGGGGGAAGCGGTTTCCCAAAAGGTGCCAGTGATTATG
TGCACAACTAAAAGTGAAGAATTTGATATTCACTGGGGCAAAAAACAGGGGGTGGATGCCTACATCACTAAGCCCTTTGA
TCCTGCAGAACTCGTTGCCAGTGTCAAACAGCTCTTGGGATAG
ATGGCCACAATTATGGTTGTTGATGACAGTCCCACTCTGCGGGCAATGATTGTTGAACTCATGAAAGAGCAAGGCTACGA
CGTTGTTGAGGCCGAAGATGGCATCGAAGCTCAGGAAAAAATCAAAGCCCAATGCCCTGACCTGGTGATTCTAGACGTCG
TGATGCCGCGCATGAATGGTTATGAACTCTGCCGCTGGATTAAGGGGGAAGCGGTTTCCCAAAAGGTGCCAGTGATTATG
TGCACAACTAAAAGTGAAGAATTTGATATTCACTGGGGCAAAAAACAGGGGGTGGATGCCTACATCACTAAGCCCTTTGA
TCCTGCAGAACTCGTTGCCAGTGTCAAACAGCTCTTGGGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
55.462 |
99.167 |
0.55 |
| micA | Streptococcus pneumoniae Cp1015 |
40.336 |
99.167 |
0.4 |
| pilG | Acinetobacter baumannii strain A118 |
41.228 |
95 |
0.392 |
| chpA | Acinetobacter baumannii strain A118 |
40.517 |
96.667 |
0.392 |
| vicR | Streptococcus mutans UA159 |
38.655 |
99.167 |
0.383 |