Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   BMF81_RS00865 Genome accession   NZ_CP020114
Coordinates   184207..184572 (+) Length   121 a.a.
NCBI ID   WP_006194267.1    Uniprot ID   A0A161UR55
Organism   Nodularia spumigena UHCC 0039     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 179207..189572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF81_RS00850 tilS 179597..180598 (+) 1002 WP_006194270.1 tRNA lysidine(34) synthetase TilS -
  BMF81_RS00855 (BMF81_00166) hmpF 180660..182420 (-) 1761 WP_006194269.1 pilus motility taxis protein HmpF -
  BMF81_RS00860 - 182824..184044 (+) 1221 WP_006194268.1 response regulator -
  BMF81_RS00865 pilH 184207..184572 (+) 366 WP_006194267.1 response regulator Machinery gene
  BMF81_RS00870 - 184580..185110 (+) 531 WP_006194266.1 chemotaxis protein CheW -
  BMF81_RS00875 - 185127..188153 (+) 3027 WP_107805748.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13371.55 Da        Isoelectric Point: 5.7159

>NTDB_id=221299 BMF81_RS00865 WP_006194267.1 184207..184572(+) (pilH) [Nodularia spumigena UHCC 0039]
MSTVLIVEDSIAQREMITDLLKASGLIVTHAHDGVEALEAIQTAPPDLVVLDIVMPRMNGYEVCRRLKSNPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=221299 BMF81_RS00865 WP_006194267.1 184207..184572(+) (pilH) [Nodularia spumigena UHCC 0039]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCACAACGGGAGATGATTACAGACCTCCTGAAAGCAAGTGGTTTAAT
AGTCACCCATGCCCATGACGGAGTAGAAGCATTGGAGGCAATTCAAACTGCCCCTCCCGATTTAGTGGTATTGGATATTG
TTATGCCCCGGATGAACGGCTATGAAGTCTGTCGTCGGTTAAAATCCAACCCGAAAACCCAAAACGTCCCCGTGGTGATG
TGTTCTTCTAAAGGTGAAGAATTTGACCGCTACTGGGGTATGAAGCAAGGTGCGGATGCTTACATAGCCAAACCGTTTCA
ACCAACCGAATTGGTGGGAACAGTCAAACAACTGCTGCGAGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161UR55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

36.364

100

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment