Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVH73_RS06610 Genome accession   NZ_CP020046
Coordinates   1407447..1408973 (-) Length   508 a.a.
NCBI ID   WP_079417221.1    Uniprot ID   -
Organism   Thiomonas intermedia strain ATCC 15466     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1402447..1413973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVH73_RS06595 - 1403930..1404877 (+) 948 WP_245800446.1 helix-turn-helix transcriptional regulator -
  BVH73_RS06600 - 1405016..1406293 (+) 1278 WP_079417217.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  BVH73_RS06605 - 1406385..1407155 (+) 771 WP_079417219.1 glycine zipper 2TM domain-containing protein -
  BVH73_RS06610 comM 1407447..1408973 (-) 1527 WP_079417221.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVH73_RS06615 - 1408984..1409271 (-) 288 WP_079417223.1 accessory factor UbiK family protein -
  BVH73_RS06620 - 1409561..1411156 (+) 1596 WP_079417225.1 ABC transporter substrate-binding protein -
  BVH73_RS06625 - 1411325..1412335 (+) 1011 WP_079417227.1 ABC transporter permease subunit -
  BVH73_RS06630 - 1412353..1413300 (+) 948 WP_079417229.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53345.28 Da        Isoelectric Point: 7.7979

>NTDB_id=220674 BVH73_RS06610 WP_079417221.1 1407447..1408973(-) (comM) [Thiomonas intermedia strain ATCC 15466]
MSLAQVASRALLGMEAPPVTVEVHLSPGLPGFTIVGLPEAEVREARDRVRSALLNSGLGFPSNKRIVVNLAPADLPKESG
RFDLPIAIGLLAAQGLIPAGRLQGHTFAGELSLTGELRPTRGALAMACALASQRPEAGDDLRLVLPQQSAEEAALAQAAT
VLGARDLLQVVAYLLEQDGAAQRVTAAATTLAHASGPDMAEVRGHSAAKRALEIAAAGGHHVLMVGPPGSGKSMLAQRFV
GLLPPLTREQALESASVLSLVGRFDPAQWGRRFVRSPHHTASAVALVGGGAGTIRPGEISLATHNLLFLDELPEFDRAVL
ESLREPLETGRIHISRAARQAEFPAQFQLIAAMNPCPCGYLGHATRACRCTPDQIARYQGRISGPLLDRIDIQVEVGAIA
PETLLQLPQGETSAQIATRVAAAAEVQIARQGVRNAQLQGAELDAHCVLDPAGSAFLSQAMTRLGASSRQAHRVLRLART
IADLAGVQSIALNHLAEALQLRRALAQA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=220674 BVH73_RS06610 WP_079417221.1 1407447..1408973(-) (comM) [Thiomonas intermedia strain ATCC 15466]
ATGTCGCTGGCGCAGGTTGCCAGCCGGGCTTTGTTGGGCATGGAGGCGCCGCCGGTCACGGTCGAGGTGCATCTGTCTCC
CGGTCTGCCCGGCTTCACCATCGTCGGCCTGCCCGAGGCCGAAGTCCGGGAGGCGCGCGACCGTGTGCGCAGCGCCCTCC
TCAACAGCGGTCTGGGCTTTCCCTCGAACAAGCGCATCGTCGTCAACCTGGCGCCGGCCGATCTGCCCAAGGAATCGGGC
CGCTTTGACCTGCCCATCGCGATCGGGCTGCTGGCGGCGCAGGGCCTGATTCCGGCCGGGCGGCTTCAAGGGCATACCTT
CGCCGGCGAGTTGTCGCTCACCGGCGAACTGCGCCCCACGCGAGGCGCTCTGGCCATGGCCTGCGCCCTGGCTTCGCAGC
GGCCGGAGGCGGGCGATGACCTCAGGCTGGTCTTGCCGCAGCAAAGCGCGGAAGAAGCGGCGCTGGCGCAGGCGGCCACG
GTTCTTGGTGCACGCGACCTGCTGCAGGTCGTGGCCTATCTGCTCGAACAGGATGGTGCCGCGCAGCGCGTGACGGCCGC
CGCCACCACGCTGGCCCATGCGTCCGGACCCGATATGGCCGAGGTGCGCGGCCACAGTGCAGCCAAGCGGGCCCTGGAGA
TCGCCGCGGCCGGAGGGCATCATGTGCTCATGGTGGGACCGCCGGGCAGCGGCAAATCCATGCTGGCCCAGCGTTTTGTC
GGCCTGCTTCCGCCCTTGACCCGCGAGCAGGCGCTGGAGAGTGCGTCGGTGCTCAGTCTGGTGGGGCGGTTCGACCCGGC
GCAGTGGGGGCGCCGTTTTGTCCGCAGCCCCCATCACACGGCGTCCGCGGTGGCGCTGGTGGGGGGCGGTGCGGGCACGA
TACGGCCGGGCGAGATTTCCTTGGCGACCCACAATCTGCTTTTTCTCGATGAACTCCCGGAGTTTGATCGGGCCGTGCTG
GAAAGCCTGCGCGAGCCGCTGGAAACCGGGCGCATCCACATTTCCCGCGCGGCGAGGCAGGCGGAATTTCCGGCGCAGTT
CCAGCTGATCGCCGCGATGAACCCCTGTCCCTGCGGGTATCTGGGCCATGCCACTCGGGCGTGTCGCTGTACGCCGGATC
AGATCGCGCGTTATCAGGGGCGCATTTCCGGGCCGCTGCTCGACCGGATCGATATCCAGGTGGAGGTCGGCGCCATAGCG
CCCGAAACCTTGCTGCAGTTGCCACAGGGCGAGACCAGTGCGCAGATCGCAACGCGCGTGGCGGCGGCCGCCGAAGTCCA
GATCGCCAGACAGGGCGTGCGCAATGCCCAGCTGCAGGGCGCCGAGTTGGATGCGCATTGCGTGCTCGATCCAGCCGGCA
GCGCGTTTCTGAGCCAGGCCATGACGCGGCTGGGCGCATCGTCCCGCCAGGCGCACCGGGTGCTGCGCCTGGCGCGCACC
ATCGCCGATCTGGCCGGGGTGCAGTCCATTGCGCTGAACCATCTTGCCGAAGCCCTGCAACTGCGCCGTGCGCTTGCGCA
AGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-402)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)

Subunit ChlI of Mg-chelatase (ChlI)

(21-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.392

100

0.506
  comM Vibrio cholerae strain A1552

49.901

99.409

0.496
  comM Glaesserella parasuis strain SC1401

49.409

100

0.494
  comM Vibrio campbellii strain DS40M4

49.405

99.213

0.49
  comM Legionella pneumophila str. Paris

48.235

100

0.484
  comM Legionella pneumophila strain ERS1305867

48.235

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.275

100

0.404

Multiple sequence alignment