Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | BV122_RS01635 | Genome accession | NZ_CP020009 |
| Coordinates | 338640..339089 (-) | Length | 149 a.a. |
| NCBI ID | WP_105182544.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain 5P54H1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 333640..344089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV122_RS01615 (BV122_329) | rho | 334030..335292 (+) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
| BV122_RS01620 (BV122_330) | pilD | 335346..336038 (-) | 693 | WP_014550482.1 | prepilin peptidase | Machinery gene |
| BV122_RS01625 (BV122_331) | pilC | 336035..337252 (-) | 1218 | WP_105182543.1 | type II secretion system F family protein | Machinery gene |
| BV122_RS01630 (BV122_332) | pilB | 337249..338643 (-) | 1395 | WP_011271972.1 | GspE/PulE family protein | Machinery gene |
| BV122_RS01635 (BV122_333) | pilA | 338640..339089 (-) | 450 | WP_105182544.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| BV122_RS01640 (BV122_334) | ampD | 339204..339764 (+) | 561 | WP_042599472.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| BV122_RS01645 (BV122_335) | corC | 340377..341276 (+) | 900 | WP_005656283.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| BV122_RS01650 (BV122_336) | lnt | 341299..342828 (+) | 1530 | WP_079989936.1 | apolipoprotein N-acyltransferase | - |
| BV122_RS01655 (BV122_337) | rsmE | 342878..343615 (+) | 738 | WP_011271976.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15454.80 Da Isoelectric Point: 8.7944
>NTDB_id=219861 BV122_RS01635 WP_105182544.1 338640..339089(-) (pilA) [Haemophilus influenzae strain 5P54H1]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFSANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQHYTKKAAVSELLQASAPYKADVELCVYSTGKPSSCSGGSNGIA
ADIKTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFSANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=219861 BV122_RS01635 WP_105182544.1 338640..339089(-) (pilA) [Haemophilus influenzae strain 5P54H1]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTTCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAACATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTTTATAGCACAGGTAAACCTTCCAGTTGCTCGGGAGGAAGCAATGGAATTGCA
GCGGATATAAAGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTTCAGCAAATTTTTGCGGAAGTGTCACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
93.289 |
100 |
0.933 |
| pilA | Haemophilus influenzae Rd KW20 |
87.919 |
100 |
0.879 |
| pilA | Glaesserella parasuis strain SC1401 |
55.705 |
100 |
0.557 |
| pilA2 | Legionella pneumophila str. Paris |
40.441 |
91.275 |
0.369 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.441 |
91.275 |
0.369 |
| pilA | Vibrio campbellii strain DS40M4 |
38.298 |
94.631 |
0.362 |