Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BV122_RS01350 | Genome accession | NZ_CP020009 |
| Coordinates | 287368..287874 (+) | Length | 168 a.a. |
| NCBI ID | WP_042593471.1 | Uniprot ID | A0A0D0HQS7 |
| Organism | Haemophilus influenzae strain 5P54H1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 282368..292874
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BV122_RS01345 (BV122_275) | uvrA | 284384..287215 (-) | 2832 | WP_105182534.1 | excinuclease ABC subunit UvrA | - |
| BV122_RS01350 (BV122_276) | ssb | 287368..287874 (+) | 507 | WP_042593471.1 | single-stranded DNA-binding protein | Machinery gene |
| BV122_RS01355 (BV122_277) | - | 288052..288846 (-) | 795 | WP_005692201.1 | energy transducer TonB | - |
| BV122_RS01360 (BV122_278) | exbD | 288856..289299 (-) | 444 | WP_005648853.1 | TonB system transport protein ExbD | - |
| BV122_RS01365 (BV122_280) | exbB | 289303..289755 (-) | 453 | WP_005648856.1 | TonB-system energizer ExbB | - |
| BV122_RS01370 (BV122_281) | bcp | 289923..290390 (-) | 468 | WP_005668209.1 | thioredoxin-dependent thiol peroxidase | - |
| BV122_RS01375 (BV122_282) | dapA | 290491..291387 (+) | 897 | WP_005692198.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| BV122_RS01380 (BV122_283) | bamC | 291498..292127 (+) | 630 | WP_044345440.1 | outer membrane protein assembly factor BamC | - |
| BV122_RS01385 (BV122_284) | hpf | 292317..292640 (+) | 324 | WP_005653397.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18753.50 Da Isoelectric Point: 5.2649
>NTDB_id=219856 BV122_RS01350 WP_042593471.1 287368..287874(+) (ssb) [Haemophilus influenzae strain 5P54H1]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNASGSGNDMGGTPQSSYQARQTNNGNSYQSSRPAPQQSAPQAEPPMD
GFDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=219856 BV122_RS01350 WP_042593471.1 287368..287874(+) (ssb) [Haemophilus influenzae strain 5P54H1]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGACCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTATATGTGGAAGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAAGTGGTTCTGGTAATGATATGGGCGGTACGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAATCTGCACCACAGGCTGAACCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
67.778 |
100 |
0.726 |
| ssb | Vibrio cholerae strain A1552 |
55.495 |
100 |
0.601 |
| ssb | Neisseria meningitidis MC58 |
50.289 |
100 |
0.518 |
| ssb | Neisseria gonorrhoeae MS11 |
50.289 |
100 |
0.518 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
34.27 |
100 |
0.363 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.057 |
100 |
0.363 |