Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SPSF3K_RS08675 Genome accession   NZ_CP025420
Coordinates   1716957..1717634 (-) Length   225 a.a.
NCBI ID   WP_003108197.1    Uniprot ID   A0ABP2SYN7
Organism   Streptococcus parauberis strain SPOF3K     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1711957..1722634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS08660 (SPSF3K_01756) sodA 1712937..1713545 (-) 609 WP_003102930.1 superoxide dismutase SodA -
  SPSF3K_RS08665 (SPSF3K_01757) holA 1713655..1714683 (-) 1029 WP_003104123.1 DNA polymerase III subunit delta -
  SPSF3K_RS08670 (SPSF3K_01758) comEC/celB 1714730..1716964 (-) 2235 WP_308686828.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SPSF3K_RS08675 (SPSF3K_01759) comEA 1716957..1717634 (-) 678 WP_003108197.1 helix-hairpin-helix domain-containing protein Machinery gene
  SPSF3K_RS08680 (SPSF3K_01760) - 1717694..1718434 (-) 741 WP_003107274.1 lysophospholipid acyltransferase family protein -
  SPSF3K_RS08685 (SPSF3K_01761) - 1718574..1719344 (+) 771 WP_003108196.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SPSF3K_RS08690 (SPSF3K_01762) - 1719334..1719618 (+) 285 WP_003108195.1 GIY-YIG nuclease family protein -
  SPSF3K_RS08695 (SPSF3K_01763) - 1719632..1721629 (-) 1998 WP_003108194.1 KUP/HAK/KT family potassium transporter -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24856.48 Da        Isoelectric Point: 5.0449

>NTDB_id=218989 SPSF3K_RS08675 WP_003108197.1 1716957..1717634(-) (comEA) [Streptococcus parauberis strain SPOF3K]
MKEILTDIKQWYVNHYILGRIIAIIVCICLLFSLSLFVFGNSTADKQKEEDVIELRKEIIEVKEDKEQSQAESKSTDTSN
QIMVDLKGAVKQEGVYKLPADSRVTDLVKMAGGLTQDADRQAINLAQKLSDASIIYIARLGENKSVLPSSTVQAADAPSD
DEKININSATSDQLTKIPGIGEKRAHEIIEARDKMGGFKSLEDLTKISGIGKKTLEKMKDNLSIE

Nucleotide


Download         Length: 678 bp        

>NTDB_id=218989 SPSF3K_RS08675 WP_003108197.1 1716957..1717634(-) (comEA) [Streptococcus parauberis strain SPOF3K]
ATGAAAGAAATTCTAACAGATATAAAACAGTGGTATGTTAATCACTATATTCTAGGCAGAATCATCGCAATTATTGTTTG
TATTTGTCTTCTTTTTTCTCTATCTCTTTTTGTTTTTGGGAATAGCACAGCCGATAAACAAAAAGAAGAAGACGTGATTG
AATTAAGAAAAGAAATTATAGAAGTTAAAGAAGACAAGGAGCAGAGCCAAGCAGAATCAAAGTCGACTGATACAAGTAAC
CAAATTATGGTTGATTTGAAAGGGGCTGTTAAGCAAGAGGGGGTCTATAAGTTACCAGCAGATAGTCGAGTGACTGATTT
GGTCAAAATGGCCGGTGGGCTGACTCAAGATGCTGATAGGCAAGCCATCAATCTCGCTCAAAAATTATCCGATGCATCTA
TTATTTATATTGCAAGATTGGGTGAGAATAAATCAGTTTTACCCTCATCGACAGTCCAAGCTGCAGACGCACCTAGTGAT
GATGAAAAGATTAATATAAATAGTGCGACAAGTGATCAACTAACTAAAATTCCAGGGATTGGCGAAAAACGAGCGCATGA
AATTATCGAAGCTAGAGATAAAATGGGTGGCTTCAAAAGTCTGGAAGATTTAACCAAAATTTCTGGCATTGGTAAGAAAA
CACTTGAAAAAATGAAAGATAATTTAAGTATTGAATAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(83-136)

Helix-hairpin-helix motif (HHH_3)

(162-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

39.744

100

0.413
  comEA Lactococcus lactis subsp. cremoris KW2

36.957

100

0.378
  comEA/celA/cilE Streptococcus mitis NCTC 12261

35.47

100

0.369
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

35.652

100

0.364
  comEA/celA/cilE Streptococcus mitis SK321

35.652

100

0.364

Multiple sequence alignment