Detailed information NTG0218391

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: B1222_RS12250
• Genome accession: NZ_CP019794
• Coordinates: 2383239..2383706 (-)
• Length: 155 a.a.
• NCBI ID: WP_036655661.1
• Uniprot ID: A0AAP5JTP9
• Organism: Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2378239..2388706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B1222_RS12215 (B1222_12255)	-	2378872..2379207 (-)	336	WP_036655655.1	hypothetical protein	-
B1222_RS12220 (B1222_12260)	-	2379445..2379777 (+)	333	WP_077996383.1	PadR family transcriptional regulator	-
B1222_RS12225 (B1222_12265)	-	2379774..2380205 (+)	432	WP_149867738.1	hypothetical protein	-
B1222_RS27845 (B1222_12270)	-	2380591..2380824 (+)	234	WP_158672832.1	helix-turn-helix domain-containing protein	-
B1222_RS12235 (B1222_12275)	-	2381749..2382359 (+)	611	Protein_2444	type 1 glutamine amidotransferase domain-containing protein	-
B1222_RS12245 (B1222_12280)	rpsR	2382913..2383215 (-)	303	WP_023482399.1	30S ribosomal protein S18	-
B1222_RS12250 (B1222_12285)	ssbA	2383239..2383706 (-)	468	WP_036655661.1	single-stranded DNA-binding protein	Machinery gene
B1222_RS12255 (B1222_12290)	rpsF	2383750..2384037 (-)	288	WP_023482401.1	30S ribosomal protein S6	-
B1222_RS12260 (B1222_12295)	-	2384238..2384423 (+)	186	WP_023482402.1	YjzC family protein	-
B1222_RS12265 (B1222_12300)	-	2384429..2384692 (+)	264	WP_036655664.1	hypothetical protein	-
B1222_RS12275 (B1222_12310)	-	2384994..2385203 (-)	210	WP_023482403.1	DUF951 domain-containing protein	-
B1222_RS12280 (B1222_12315)	-	2385205..2386095 (-)	891	WP_077996386.1	mechanosensitive ion channel family protein	-
B1222_RS12285 (B1222_12320)	-	2386135..2386386 (-)	252	WP_077996387.1	DUF3343 domain-containing protein	-
B1222_RS12290 (B1222_12325)	yyaC	2386484..2387101 (+)	618	WP_077996388.1	spore protease YyaC	-
B1222_RS12295 (B1222_12330)	-	2387073..2387555 (-)	483	WP_158225702.1	DUF4446 family protein	-
B1222_RS27850	-	2387585..2387764 (-)	180	WP_390905513.1	aminotransferase class V-fold PLP-dependent enzyme	-

Sequence

Protein

• Length: 155 a.a.
• Molecular weight: 17554.35 Da
• Isoelectric Point: 4.8103

>NTDB_id=218391 B1222_RS12250 WP_036655661.1 2383239..2383706(-) (ssbA) [Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPYMNQQTRERETDFINIVTWRQLAETCANYLRKGRLTAVEGRIQV
RNYENNEGRKVYVTEIVADNVRFLESNNAGNRNNDEGSYSNAGYGGGSRSGGSQQQDPFLDDSKPIDISDDDLPF

Nucleotide

• Length: 468 bp

>NTDB_id=218391 B1222_RS12250 WP_036655661.1 2383239..2383706(-) (ssbA) [Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537]
TTGCTTAACCGTGTGATTCTGATCGGCAGGCTGACAAGAGACCCGGAATTGCGATACACTCCATCCGGTGTGGCTGTTAC
CCAATTTACCCTGGCGGTAGACCGTCCGTATATGAACCAGCAAACGCGTGAGCGGGAGACAGATTTCATTAATATCGTGA
CGTGGAGACAGCTGGCTGAGACTTGTGCCAACTACCTGCGGAAAGGCCGTTTGACGGCGGTAGAAGGAAGAATTCAAGTG
CGTAATTATGAGAACAATGAGGGCCGCAAAGTATACGTGACCGAAATTGTGGCTGATAATGTGCGGTTCCTTGAATCGAA
TAATGCCGGAAACCGCAATAACGACGAAGGGTCTTATTCTAATGCAGGATACGGTGGCGGAAGCCGAAGCGGTGGATCAC
AACAGCAAGATCCGTTCCTCGATGATAGCAAGCCGATTGATATTTCAGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-104)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	52.601	100	0.587
ssb	Latilactobacillus sakei subsp. sakei 23K	46.199	100	0.51
ssb	Neisseria gonorrhoeae MS11	36.158	100	0.413
ssb	Neisseria meningitidis MC58	36.158	100	0.413
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.286	67.742	0.368
ssb	Glaesserella parasuis strain SC1401	31.638	100	0.361