Detailed information NTG0217856

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: BXP28_RS16855
• Genome accession: NZ_CP019687
• Coordinates: 3240689..3241156 (+)
• Length: 155 a.a.
• NCBI ID: WP_036655661.1
• Uniprot ID: A0AAP5JTP9
• Organism: Paenibacillus larvae subsp. larvae strain ATCC-9545
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3235689..3246156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BXP28_RS16810 (BXP28_16995)	-	3236838..3237320 (+)	483	WP_158225702.1	DUF4446 family protein	-
BXP28_RS16815 (BXP28_17000)	yyaC	3237292..3237909 (-)	618	WP_024095528.1	spore protease YyaC	-
BXP28_RS16820 (BXP28_17005)	-	3238007..3238258 (+)	252	WP_024095527.1	DUF3343 domain-containing protein	-
BXP28_RS16825 (BXP28_17010)	-	3238298..3239188 (+)	891	WP_023482404.1	mechanosensitive ion channel family protein	-
BXP28_RS16830 (BXP28_17015)	-	3239190..3239399 (+)	210	WP_023482403.1	DUF951 domain-containing protein	-
BXP28_RS16840 (BXP28_17025)	-	3239702..3239965 (-)	264	WP_036655664.1	hypothetical protein	-
BXP28_RS16845 (BXP28_17030)	-	3239971..3240156 (-)	186	WP_023482402.1	YjzC family protein	-
BXP28_RS16850 (BXP28_17035)	rpsF	3240358..3240645 (+)	288	WP_023482401.1	30S ribosomal protein S6	-
BXP28_RS16855 (BXP28_17040)	ssbA	3240689..3241156 (+)	468	WP_036655661.1	single-stranded DNA-binding protein	Machinery gene
BXP28_RS16860 (BXP28_17045)	rpsR	3241180..3241482 (+)	303	WP_023482399.1	30S ribosomal protein S18	-
BXP28_RS24495	-	3241762..3242032 (+)	271	Protein_3393	NCS2 family permease	-
BXP28_RS16865 (BXP28_17050)	-	3242047..3242661 (-)	615	WP_036655658.1	type 1 glutamine amidotransferase domain-containing protein	-
BXP28_RS22895 (BXP28_17055)	-	3242668..3243033 (-)	366	WP_023482397.1	hypothetical protein	-
BXP28_RS16870 (BXP28_17060)	-	3243115..3243447 (-)	333	WP_023482396.1	PadR family transcriptional regulator	-
BXP28_RS16875 (BXP28_17065)	-	3243685..3244020 (+)	336	WP_036655655.1	hypothetical protein	-
BXP28_RS16880 (BXP28_17070)	-	3244425..3245342 (+)	918	WP_036657285.1	DUF2232 domain-containing protein	-

Sequence

Protein

• Length: 155 a.a.
• Molecular weight: 17554.35 Da
• Isoelectric Point: 4.8103

>NTDB_id=217856 BXP28_RS16855 WP_036655661.1 3240689..3241156(+) (ssbA) [Paenibacillus larvae subsp. larvae strain ATCC-9545]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPYMNQQTRERETDFINIVTWRQLAETCANYLRKGRLTAVEGRIQV
RNYENNEGRKVYVTEIVADNVRFLESNNAGNRNNDEGSYSNAGYGGGSRSGGSQQQDPFLDDSKPIDISDDDLPF

Nucleotide

• Length: 468 bp

>NTDB_id=217856 BXP28_RS16855 WP_036655661.1 3240689..3241156(+) (ssbA) [Paenibacillus larvae subsp. larvae strain ATCC-9545]
TTGCTTAACCGTGTGATTCTGATCGGCAGGCTGACAAGAGACCCGGAATTGCGATACACTCCATCCGGTGTGGCTGTTAC
CCAATTTACCCTGGCGGTAGACCGTCCGTATATGAACCAGCAAACGCGTGAGCGGGAGACAGATTTCATTAATATCGTGA
CGTGGAGACAGCTGGCTGAGACTTGTGCCAACTACCTGCGGAAAGGCCGTTTGACGGCGGTAGAAGGAAGAATTCAAGTG
CGTAATTATGAGAACAATGAGGGCCGCAAAGTATACGTGACCGAAATTGTGGCTGATAATGTGCGGTTCCTTGAATCGAA
TAATGCCGGAAACCGCAATAACGACGAAGGGTCTTATTCTAATGCAGGATACGGTGGCGGAAGCCGAAGCGGTGGATCAC
AACAGCAAGATCCGTTCCTCGATGATAGCAAGCCGATTGATATTTCAGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-104)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	52.601	100	0.587
ssb	Latilactobacillus sakei subsp. sakei 23K	46.199	100	0.51
ssb	Neisseria gonorrhoeae MS11	36.158	100	0.413
ssb	Neisseria meningitidis MC58	36.158	100	0.413
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.286	67.742	0.368
ssb	Glaesserella parasuis strain SC1401	31.638	100	0.361