Detailed information NTG0217629

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: ERICII_RS20020
• Genome accession: NZ_CP019652
• Coordinates: 4006037..4006504 (-)
• Length: 155 a.a.
• NCBI ID: WP_036655661.1
• Uniprot ID: A0AAP5JTP9
• Organism: Paenibacillus larvae subsp. larvae DSM 25430
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4001037..4011504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ERICII_RS19985 (ERICII_04091)	-	4001421..4002263 (-)	843	WP_023483121.1	ABC transporter ATP-binding protein	-
ERICII_RS19990 (ERICII_04092)	-	4002445..4003668 (-)	1224	WP_023483236.1	IS256 family transposase	-
ERICII_RS19995	-	4003803..4004078 (+)	276	Protein_3889	PadR family transcriptional regulator	-
ERICII_RS20000	-	4004160..4004525 (+)	366	WP_023482397.1	hypothetical protein	-
ERICII_RS20005 (ERICII_04094)	-	4004532..4005146 (+)	615	WP_036655658.1	type 1 glutamine amidotransferase domain-containing protein	-
ERICII_RS21660	-	4005161..4005431 (-)	271	Protein_3892	NCS2 family permease	-
ERICII_RS20015 (ERICII_04095)	rpsR	4005711..4006013 (-)	303	WP_023482399.1	30S ribosomal protein S18	-
ERICII_RS20020 (ERICII_04096)	ssbA	4006037..4006504 (-)	468	WP_036655661.1	single-stranded DNA-binding protein	Machinery gene
ERICII_RS20025 (ERICII_04097)	rpsF	4006548..4006835 (-)	288	WP_023482401.1	30S ribosomal protein S6	-
ERICII_RS20030 (ERICII_04098)	-	4007037..4007222 (+)	186	WP_023482402.1	YjzC family protein	-
ERICII_RS20035 (ERICII_04099)	-	4007228..4007491 (+)	264	WP_024095526.1	hypothetical protein	-
ERICII_RS20045 (ERICII_04101)	-	4007794..4008003 (-)	210	WP_023482403.1	DUF951 domain-containing protein	-
ERICII_RS20050 (ERICII_04102)	-	4008005..4008895 (-)	891	WP_023482404.1	mechanosensitive ion channel family protein	-
ERICII_RS20055 (ERICII_04103)	-	4008935..4009186 (-)	252	WP_024095527.1	DUF3343 domain-containing protein	-
ERICII_RS20060 (ERICII_04104)	yyaC	4009284..4009901 (+)	618	WP_024095528.1	spore protease YyaC	-
ERICII_RS20065 (ERICII_04105)	-	4009873..4010355 (-)	483	WP_158225702.1	DUF4446 family protein	-

Sequence

Protein

• Length: 155 a.a.
• Molecular weight: 17554.35 Da
• Isoelectric Point: 4.8103

>NTDB_id=217629 ERICII_RS20020 WP_036655661.1 4006037..4006504(-) (ssbA) [Paenibacillus larvae subsp. larvae DSM 25430]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPYMNQQTRERETDFINIVTWRQLAETCANYLRKGRLTAVEGRIQV
RNYENNEGRKVYVTEIVADNVRFLESNNAGNRNNDEGSYSNAGYGGGSRSGGSQQQDPFLDDSKPIDISDDDLPF

Nucleotide

• Length: 468 bp

>NTDB_id=217629 ERICII_RS20020 WP_036655661.1 4006037..4006504(-) (ssbA) [Paenibacillus larvae subsp. larvae DSM 25430]
TTGCTTAACCGTGTGATTCTGATCGGCAGGCTGACAAGAGACCCGGAATTGCGATACACTCCATCCGGTGTGGCTGTTAC
CCAATTTACCCTGGCGGTAGACCGTCCGTATATGAACCAGCAAACGCGTGAGCGGGAGACAGATTTCATTAATATCGTGA
CGTGGAGACAGCTGGCTGAGACTTGTGCCAACTACCTGCGGAAAGGCCGTTTGACGGCGGTAGAAGGAAGAATTCAAGTG
CGTAATTATGAGAACAATGAGGGCCGCAAAGTATACGTGACCGAAATTGTGGCTGATAATGTGCGGTTCCTTGAATCGAA
TAATGCCGGAAACCGCAATAACGACGAAGGGTCTTATTCTAATGCAGGATACGGTGGCGGAAGCCGAAGCGGTGGATCAC
AACAGCAAGATCCGTTCCTCGATGATAGCAAGCCGATTGATATTTCAGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-104)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	52.601	100	0.587
ssb	Latilactobacillus sakei subsp. sakei 23K	46.199	100	0.51
ssb	Neisseria gonorrhoeae MS11	36.158	100	0.413
ssb	Neisseria meningitidis MC58	36.158	100	0.413
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.286	67.742	0.368
ssb	Glaesserella parasuis strain SC1401	31.638	100	0.361