Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Mag101_RS00980 Genome accession   NZ_CP019650
Coordinates   241553..243043 (-) Length   496 a.a.
NCBI ID   WP_077399545.1    Uniprot ID   A0A1Q2M0Z7
Organism   Microbulbifer agarilyticus strain GP101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 236553..248043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Mag101_RS00950 (Mag101_00980) - 238270..238503 (+) 234 WP_077399525.1 DUF3565 domain-containing protein -
  Mag101_RS00955 (Mag101_00985) - 238503..238958 (+) 456 WP_077399528.1 YaiI/YqxD family protein -
  Mag101_RS00960 (Mag101_00990) - 238958..239479 (+) 522 WP_077399532.1 GNAT family N-acetyltransferase -
  Mag101_RS00965 (Mag101_00995) - 239469..240014 (+) 546 WP_077399535.1 GNAT family N-acetyltransferase -
  Mag101_RS00970 (Mag101_01000) - 240039..241343 (-) 1305 WP_077399539.1 DASH family cryptochrome -
  Mag101_RS00975 (Mag101_01005) - 241318..241521 (-) 204 WP_077399542.1 DUF2256 domain-containing protein -
  Mag101_RS00980 (Mag101_01010) comM 241553..243043 (-) 1491 WP_077399545.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Mag101_RS00985 (Mag101_01015) - 243145..243384 (-) 240 WP_077399548.1 accessory factor UbiK family protein -
  Mag101_RS00990 (Mag101_01020) - 243821..244543 (+) 723 WP_077399551.1 TorF family putative porin -
  Mag101_RS00995 (Mag101_01025) - 244600..244938 (+) 339 WP_010133725.1 P-II family nitrogen regulator -
  Mag101_RS01000 (Mag101_01030) - 245030..246289 (+) 1260 WP_077399553.1 ammonium transporter -
  Mag101_RS01005 (Mag101_01035) - 246405..246743 (+) 339 WP_010133727.1 P-II family nitrogen regulator -
  Mag101_RS01010 (Mag101_01040) - 247166..247378 (+) 213 WP_077399556.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53138.68 Da        Isoelectric Point: 7.7122

>NTDB_id=217556 Mag101_RS00980 WP_077399545.1 241553..243043(-) (comM) [Microbulbifer agarilyticus strain GP101]
MSLSITYARAQLGVAAPLVTVETHLANGLPAFNIVGLPEAAVRESRDRVRSAIINSHFEFPQRRITVNLAPADLPKAGGR
YDLAIALGVLAASGQIPGETLEQFEFIGELALSGGLRPVPGGLPAAMACGDSGRTLVISAESAPEAALIKTPVKSANSLL
QVCAQLHGREPLPDAVGDESIEEALYADLADVRGQLKARRALEVAAAGSHNLLFYGPPGTGKTMLASRLPGILPPLTERE
RIEVAALYSSAGLARESQRPFRAPHHSASPTALVGGGSNPRPGEISLAHRGVLFLDEMPEFPRAALEILREPLENGEVRI
SRARAQVTFPAQFQLVAAMNPCPCGYLGESRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVASMSAAQLQDSPAGESSAVV
RERVRNARKQQIQRQGKINGELQGSELDEHCRLGKAESALLRASVEKLGLSARSYHRVLRVARTLADLSEQEHVGTAHIA
EALAYRNLDRKTVIPA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=217556 Mag101_RS00980 WP_077399545.1 241553..243043(-) (comM) [Microbulbifer agarilyticus strain GP101]
GTGAGCCTATCCATTACCTATGCCCGTGCCCAACTGGGGGTCGCGGCGCCACTGGTCACCGTAGAAACCCATCTCGCCAA
CGGTTTGCCCGCATTCAATATTGTCGGTCTGCCGGAAGCCGCCGTGCGCGAAAGCCGCGATCGCGTGCGCAGCGCCATTA
TCAACAGCCATTTCGAGTTCCCCCAGCGGCGCATCACCGTGAATCTGGCGCCCGCGGATCTGCCCAAGGCCGGCGGGCGC
TACGACCTGGCGATTGCCCTGGGCGTACTGGCCGCCTCCGGCCAGATACCCGGGGAAACCCTGGAGCAATTTGAATTTAT
CGGGGAGCTGGCTCTATCCGGCGGCCTGCGCCCGGTACCCGGGGGGCTGCCGGCGGCCATGGCTTGCGGCGACAGCGGCC
GCACCCTGGTCATTTCGGCCGAGTCGGCCCCAGAAGCGGCGCTGATCAAGACCCCGGTCAAATCCGCTAACAGCCTGCTG
CAGGTCTGTGCACAATTGCACGGGCGCGAGCCCTTGCCCGATGCCGTCGGCGATGAATCCATAGAAGAAGCACTGTATGC
AGACCTCGCCGACGTGCGCGGACAGCTAAAAGCGCGGCGCGCTCTCGAGGTGGCCGCCGCAGGGTCGCACAACCTGCTGT
TTTATGGACCGCCGGGTACCGGTAAAACCATGCTCGCCAGCCGTCTGCCGGGAATACTGCCGCCATTGACCGAGCGCGAG
CGCATCGAGGTCGCCGCGCTCTATTCCAGTGCAGGACTCGCACGGGAGAGCCAAAGACCCTTCCGTGCACCACATCATTC
CGCCTCACCCACCGCACTGGTGGGCGGTGGTAGCAACCCGCGCCCGGGGGAAATCAGCCTCGCCCACCGCGGCGTACTGT
TTCTCGACGAGATGCCGGAATTTCCCCGTGCGGCACTGGAAATTTTGCGCGAGCCGCTGGAGAACGGCGAGGTACGCATT
TCCCGCGCCCGCGCCCAAGTCACCTTCCCCGCTCAATTTCAGCTGGTCGCGGCAATGAACCCTTGCCCCTGTGGCTATCT
GGGGGAGTCCCGCTGCCGCTGCACCCCAGATCAGATCGACCGCTATCGCAACAAGCTCTCCGGCCCACTACTGGACCGCA
TCGATATGCAGGTAGAAGTCGCCAGCATGAGCGCGGCCCAGCTGCAGGATTCTCCCGCAGGGGAATCGTCGGCAGTGGTC
CGGGAACGGGTGCGTAACGCACGCAAGCAGCAGATACAGCGACAGGGGAAGATTAACGGCGAGCTACAGGGCAGCGAACT
GGATGAACATTGTCGCCTGGGGAAAGCTGAGAGTGCACTGTTGCGCGCCTCGGTAGAAAAACTCGGGCTGTCTGCACGCA
GTTACCACCGTGTACTGAGGGTGGCACGCACCCTTGCGGACCTGAGTGAGCAGGAGCATGTCGGCACTGCGCACATCGCC
GAGGCTCTAGCCTACCGCAACCTTGATCGCAAAACCGTTATCCCCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2M0Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.93

100

0.55
  comM Haemophilus influenzae Rd KW20

53.28

100

0.54
  comM Vibrio campbellii strain DS40M4

53.722

100

0.538
  comM Glaesserella parasuis strain SC1401

51.098

100

0.516
  comM Legionella pneumophila str. Paris

50.299

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.299

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.219

100

0.458

Multiple sequence alignment