Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CXB69_RS09175 Genome accession   NZ_CP025206
Coordinates   1855291..1856004 (-) Length   237 a.a.
NCBI ID   WP_016265311.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0074     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850291..1861004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB69_RS09160 (CXB69_09150) - 1851106..1851972 (+) 867 WP_035146172.1 GRP family sugar transporter -
  CXB69_RS09165 (CXB69_09155) - 1852139..1854685 (+) 2547 WP_035146175.1 YfhO family protein -
  CXB69_RS09170 (CXB69_09160) - 1854790..1855227 (+) 438 WP_052039222.1 hypothetical protein -
  CXB69_RS09175 (CXB69_09165) treR 1855291..1856004 (-) 714 WP_016265311.1 trehalose operon repressor Regulator
  CXB69_RS09180 (CXB69_09170) - 1856177..1857655 (+) 1479 WP_052039223.1 PTS transporter subunit EIIC -
  CXB69_RS09185 (CXB69_09175) - 1857669..1859318 (+) 1650 WP_025016359.1 alpha,alpha-phosphotrehalase -
  CXB69_RS09190 (CXB69_09180) - 1859332..1859823 (+) 492 WP_016265308.1 PTS sugar transporter subunit IIA -
  CXB69_RS09195 (CXB69_09185) - 1859832..1860632 (+) 801 WP_035146179.1 ChbG/HpnK family deacetylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26798.60 Da        Isoelectric Point: 6.5879

>NTDB_id=217521 CXB69_RS09175 WP_016265311.1 1855291..1856004(-) (treR) [Latilactobacillus sakei strain WiKim0074]
MSKKYEIIYRELVHKITNHVYPANSFLPSENELATAYGTSRETVRKALASLLENGFIHKIKGKGSLVLDFDKYAFPISGL
TSYRELDSLFEMHTQTTVLQLQKATVPQAPFHLDPTEILPATYIQRLRTVDGEPIVIDNDYVLTSVVPEISRAVAQDSLY
HYFEQELGLTIGYGNKEFTVIPATEEQCAILKLAPNSAVVSVKGITHLQDNTLIQFTESIHRADKFKFIEHARRQSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=217521 CXB69_RS09175 WP_016265311.1 1855291..1856004(-) (treR) [Latilactobacillus sakei strain WiKim0074]
ATGTCGAAAAAATATGAAATAATCTACCGCGAACTCGTCCATAAAATTACGAACCATGTTTATCCAGCCAACTCATTCTT
ACCCAGCGAAAACGAACTCGCAACAGCGTATGGTACCTCACGCGAAACAGTCCGCAAAGCACTCGCTAGCCTTTTAGAAA
ATGGCTTCATTCATAAGATCAAAGGCAAAGGCTCTTTAGTCCTTGATTTTGATAAATACGCCTTTCCCATTTCCGGCTTG
ACCAGTTACCGCGAATTGGATAGTCTCTTTGAAATGCACACGCAAACAACAGTCCTACAACTCCAAAAAGCAACCGTCCC
ACAAGCGCCTTTTCATTTAGACCCCACAGAGATTCTACCCGCGACCTATATTCAACGGTTACGGACCGTTGATGGTGAAC
CAATTGTTATCGATAACGACTACGTTCTAACCAGTGTTGTCCCAGAAATCTCACGGGCAGTCGCTCAGGATTCACTTTAT
CACTACTTTGAACAAGAATTGGGTCTAACTATTGGTTATGGGAATAAAGAATTCACTGTTATCCCTGCAACCGAAGAACA
GTGTGCCATTTTAAAACTCGCCCCTAATAGTGCGGTCGTTAGTGTTAAAGGTATCACTCATCTTCAGGATAATACCTTAA
TTCAATTTACCGAATCCATTCACCGGGCTGATAAATTTAAGTTTATTGAACACGCGCGCCGCCAATCAATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(120-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.339

98.312

0.367

Multiple sequence alignment