Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   XJ32_RS07315 Genome accession   NZ_CP019645
Coordinates   1573619..1573882 (-) Length   87 a.a.
NCBI ID   WP_077388852.1    Uniprot ID   -
Organism   Helicobacter bilis strain AAQJH     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568619..1578882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XJ32_RS07305 (XJ32_07260) - 1568875..1570347 (+) 1473 WP_077388850.1 restriction endonuclease subunit S -
  XJ32_RS07310 (XJ32_07265) - 1570408..1573113 (-) 2706 WP_077388851.1 TonB-dependent receptor plug domain-containing protein -
  XJ32_RS07315 (XJ32_07270) Cj0011c 1573619..1573882 (-) 264 WP_077388852.1 ComEA family DNA-binding protein Machinery gene
  XJ32_RS07320 (XJ32_07275) - 1574090..1574674 (+) 585 WP_077388853.1 UbiX family flavin prenyltransferase -
  XJ32_RS07325 (XJ32_07280) ureA 1574836..1575513 (+) 678 WP_077388854.1 urease subunit alpha -
  XJ32_RS07330 (XJ32_07285) ureB 1575835..1577544 (+) 1710 WP_077388855.1 urease subunit beta -
  XJ32_RS07335 (XJ32_07290) - 1577555..1578067 (+) 513 WP_004088058.1 AmiS/UreI family transporter -
  XJ32_RS07340 (XJ32_07295) - 1578034..1578579 (+) 546 WP_254422310.1 urease accessory protein UreE -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9835.78 Da        Isoelectric Point: 10.8769

>NTDB_id=217521 XJ32_RS07315 WP_077388852.1 1573619..1573882(-) (Cj0011c) [Helicobacter bilis strain AAQJH]
MKRFLLLFVMLSGFLFAAVNINTASQKELMTLNGIGEAKAKAIVEYRTKNRFKKIEDIMQVKGIGQAIFDKIKKDIVVTS
QPQTTKK

Nucleotide


Download         Length: 264 bp        

>NTDB_id=217521 XJ32_RS07315 WP_077388852.1 1573619..1573882(-) (Cj0011c) [Helicobacter bilis strain AAQJH]
ATGAAGAGATTTTTGCTGTTATTTGTTATGTTGTCCGGTTTTCTTTTTGCGGCGGTAAATATTAACACTGCTAGTCAAAA
AGAGCTTATGACATTAAATGGTATCGGTGAAGCAAAGGCAAAAGCGATTGTTGAATATCGCACAAAAAATAGATTCAAAA
AGATTGAAGATATTATGCAGGTAAAAGGCATAGGGCAAGCGATCTTTGATAAGATTAAAAAAGATATTGTTGTAACGAGC
CAACCACAAACAACAAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.538

89.655

0.552
  comE Neisseria gonorrhoeae MS11

52.381

96.552

0.506
  comE Neisseria gonorrhoeae MS11

52.381

96.552

0.506
  comE Neisseria gonorrhoeae MS11

52.381

96.552

0.506
  comE Neisseria gonorrhoeae MS11

52.381

96.552

0.506
  comEA Bacillus subtilis subsp. subtilis str. 168

50.704

81.609

0.414
  comEA Acinetobacter baumannii D1279779

52.459

70.115

0.368

Multiple sequence alignment