Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CWI26_RS00825 Genome accession   NZ_CP025043
Coordinates   135670..136077 (+) Length   135 a.a.
NCBI ID   WP_100881037.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 130670..141077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS00800 (CWI26_00800) - 131967..132326 (+) 360 WP_044776736.1 DUF1033 family protein -
  CWI26_RS00805 (CWI26_00805) - 132471..133421 (-) 951 WP_100881035.1 S66 family peptidase -
  CWI26_RS00810 (CWI26_00810) comGA 133507..134457 (+) 951 WP_044760311.1 competence type IV pilus ATPase ComGA Machinery gene
  CWI26_RS00815 (CWI26_00815) comGB 134369..135406 (+) 1038 WP_233486262.1 competence type IV pilus assembly protein ComGB Machinery gene
  CWI26_RS00820 (CWI26_00820) comGC 135408..135689 (+) 282 WP_044760307.1 competence type IV pilus major pilin ComGC Machinery gene
  CWI26_RS00825 (CWI26_00825) comGD 135670..136077 (+) 408 WP_100881037.1 competence type IV pilus minor pilin ComGD Machinery gene
  CWI26_RS00830 (CWI26_00830) comGE 136049..136342 (+) 294 WP_100881038.1 competence type IV pilus minor pilin ComGE Machinery gene
  CWI26_RS00835 (CWI26_00835) comGF/cglF 136329..136763 (+) 435 WP_100881039.1 competence type IV pilus minor pilin ComGF Machinery gene
  CWI26_RS00840 (CWI26_00840) comGG 136741..137268 (+) 528 WP_029180264.1 competence type IV pilus minor pilin ComGG -
  CWI26_RS00845 (CWI26_00845) comGH 137325..138278 (+) 954 WP_100881040.1 class I SAM-dependent methyltransferase Machinery gene
  CWI26_RS00850 (CWI26_00850) - 138328..139515 (+) 1188 WP_100881041.1 acetate kinase -
  CWI26_RS00860 (CWI26_00860) - 139829..140380 (+) 552 WP_100881043.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15490.75 Da        Isoelectric Point: 9.8653

>NTDB_id=216577 CWI26_RS00825 WP_100881037.1 135670..136077(+) (comGD) [Streptococcus suis strain AH681]
MLRRKNKAFTLFESLLTLLVVSFLAISLSRTVQTVFRSVQEEIFLWEFEAIYKDSQKLAASSQQKVNLAIGGQEVTNGYQ
AVEVPRNVEVLEEKNIKFEENGGNSSLTKIRFRLSQKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=216577 CWI26_RS00825 WP_100881037.1 135670..136077(+) (comGD) [Streptococcus suis strain AH681]
ATGCTAAGGCGAAAAAATAAGGCTTTTACCCTATTTGAAAGCCTGCTGACCTTGTTGGTTGTCAGTTTTCTGGCAATCAG
CCTGTCGAGAACAGTACAAACGGTCTTTCGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCAACAAAAAGTGAACCTTGCTATCGGTGGACAGGAAGTCACAAATGGTTATCAG
GCTGTAGAGGTGCCCAGAAACGTAGAGGTCTTGGAGGAGAAAAATATCAAATTTGAAGAAAATGGTGGAAATTCTTCCCT
GACCAAAATTCGTTTTCGGCTTAGTCAAAAAACAGTCACGTATCAATTATATATAGGGAGTGGTCGTTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.819

94.074

0.459
  comGD Streptococcus mutans UA159

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD Streptococcus mutans UA140

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD Lactococcus lactis subsp. cremoris KW2

40.625

94.815

0.385