Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   BWR56_RS08845 Genome accession   NZ_CP019562
Coordinates   1787613..1788026 (-) Length   137 a.a.
NCBI ID   WP_049505565.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1782613..1793026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS08820 (BWR56_1746) - 1783414..1784241 (-) 828 WP_000728097.1 membrane protein insertase YidC -
  BWR56_RS08825 (BWR56_1747) rnpA 1784216..1784587 (-) 372 WP_000748120.1 ribonuclease P protein component -
  BWR56_RS08830 (BWR56_1748) - 1784737..1785927 (-) 1191 WP_049505568.1 acetate kinase -
  BWR56_RS08835 (BWR56_1749) comYH 1785978..1786931 (-) 954 WP_049505567.1 class I SAM-dependent methyltransferase Machinery gene
  BWR56_RS08840 (BWR56_1750) - 1786990..1787580 (-) 591 WP_049505566.1 class I SAM-dependent methyltransferase -
  BWR56_RS08845 (BWR56_1751) comGG/cglG 1787613..1788026 (-) 414 WP_049505565.1 competence type IV pilus minor pilin ComGG Machinery gene
  BWR56_RS08850 (BWR56_1752) comGF/cglF 1788004..1788465 (-) 462 WP_049505564.1 competence type IV pilus minor pilin ComGF Machinery gene
  BWR56_RS08855 (BWR56_1753) comGE/cglE 1788428..1788730 (-) 303 WP_192832458.1 competence type IV pilus minor pilin ComGE Machinery gene
  BWR56_RS08860 (BWR56_1754) comGD/cglD 1788693..1789127 (-) 435 WP_049505563.1 competence type IV pilus minor pilin ComGD Machinery gene
  BWR56_RS08865 (BWR56_1755) comGC/cglC 1789090..1789413 (-) 324 WP_000735800.1 competence type IV pilus major pilin ComGC Machinery gene
  BWR56_RS08870 (BWR56_1756) comGB/cglB 1789415..1790431 (-) 1017 WP_076984831.1 competence type IV pilus assembly protein ComGB Machinery gene
  BWR56_RS08875 (BWR56_1757) comGA/cglA/cilD 1790379..1791320 (-) 942 WP_049505562.1 competence type IV pilus ATPase ComGA Machinery gene
  BWR56_RS08880 (BWR56_1758) - 1791390..1791755 (-) 366 WP_000286399.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15718.23 Da        Isoelectric Point: 10.6784

>NTDB_id=216347 BWR56_RS08845 WP_049505565.1 1787613..1788026(-) (comGG/cglG) [Streptococcus oralis strain S.MIT/ORALIS-351]
MWKKQKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHHKDFALNKEKLAAFAMAKRSKDKVEQESGERVFNLGKVRYHNTK
TGFATSVRMNKGNYEFLFPPMKNQEKKTAKKEEVATDSSNQAGKKKSEEKPEKKDKS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=216347 BWR56_RS08845 WP_049505565.1 1787613..1788026(-) (comGG/cglG) [Streptococcus oralis strain S.MIT/ORALIS-351]
GTGTGGAAAAAACAAAAAGTTAAGGCAGGCGTTCTTTTATATGCAGTTACCATGGCAGCTATTTTTAGCCTTTTGTTGCA
GTTTTATTTAAATCGGCAAGTAGCCCATCACAAAGACTTTGCCCTAAACAAAGAAAAGTTGGCAGCTTTTGCCATGGCCA
AGCGAAGTAAAGATAAGGTTGAACAAGAAAGTGGAGAACGAGTCTTTAACTTAGGAAAAGTCAGGTATCACAATACGAAA
ACAGGTTTTGCAACAAGTGTTCGTATGAATAAGGGCAACTATGAATTTCTCTTTCCTCCGATGAAAAACCAAGAAAAGAA
AACAGCTAAAAAGGAAGAGGTAGCGACTGATTCAAGCAATCAAGCAGGGAAGAAAAAATCAGAAGAAAAGCCTGAAAAGA
AAGACAAATCCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

76.23

89.051

0.679
  comGG/cglG Streptococcus mitis SK321

75.41

89.051

0.672
  comGG/cglG Streptococcus pneumoniae Rx1

76.923

85.401

0.657
  comGG/cglG Streptococcus pneumoniae D39

76.923

85.401

0.657
  comGG/cglG Streptococcus pneumoniae R6

76.923

85.401

0.657
  comGG/cglG Streptococcus pneumoniae TIGR4

76.923

85.401

0.657

Multiple sequence alignment