Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   BWR56_RS00180 Genome accession   NZ_CP019562
Coordinates   35330..35992 (+) Length   220 a.a.
NCBI ID   WP_076984216.1    Uniprot ID   -
Organism   Streptococcus oralis strain S.MIT/ORALIS-351     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 30330..40992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWR56_RS00155 (BWR56_0031) tsf 30717..31757 (+) 1041 WP_000808059.1 translation elongation factor Ts -
  BWR56_RS00160 (BWR56_0032) cysK 31861..32787 (-) 927 WP_061421561.1 cysteine synthase A -
  BWR56_RS00165 (BWR56_0033) - 32884..33327 (-) 444 WP_061421560.1 PH domain-containing protein -
  BWR56_RS00170 (BWR56_0034) - 33343..33978 (-) 636 WP_061421559.1 YigZ family protein -
  BWR56_RS00175 (BWR56_0035) comFA/cflA 34035..35333 (+) 1299 WP_061421558.1 DEAD/DEAH box helicase Machinery gene
  BWR56_RS00180 (BWR56_0036) comFC/cflB 35330..35992 (+) 663 WP_076984216.1 ComF family protein Machinery gene
  BWR56_RS00185 (BWR56_0037) hpf 36072..36620 (+) 549 WP_000599103.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BWR56_RS00190 (BWR56_0038) - 36702..37880 (+) 1179 WP_076984217.1 acetyl-CoA C-acetyltransferase -
  BWR56_RS00195 (BWR56_0039) - 38038..40011 (+) 1974 WP_076984218.1 DHH family phosphoesterase -
  BWR56_RS00200 (BWR56_0040) rplI 40008..40460 (+) 453 WP_000864211.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24850.79 Da        Isoelectric Point: 8.2081

>NTDB_id=216291 BWR56_RS00180 WP_076984216.1 35330..35992(+) (comFC/cflB) [Streptococcus oralis strain S.MIT/ORALIS-351]
MNCLLCGQTTKSELTFGSLFLLKNESSYLCSACASSFEKIGEKYCPNCMKTGVSTQCQDCKLWCKEGVQVDHKAIFTYNQ
AMKDFFSQYKFDGDFLLRKVFASVLAEELKKYRGYQFVVIPLSPERLLERGFNQVEGLVEVAGFSFKDILGKREESASSS
KSRLERLATEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLEESGALDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=216291 BWR56_RS00180 WP_076984216.1 35330..35992(+) (comFC/cflB) [Streptococcus oralis strain S.MIT/ORALIS-351]
ATGAACTGTTTATTATGTGGCCAGACTACAAAGAGTGAGTTAACTTTTGGTAGTCTCTTCCTTTTGAAGAATGAGAGCAG
TTATCTTTGCTCAGCTTGTGCTTCTAGTTTTGAGAAGATTGGTGAGAAATATTGTCCAAACTGTATGAAAACAGGGGTGT
CAACTCAATGTCAAGATTGTAAACTTTGGTGTAAAGAAGGAGTTCAGGTTGATCATAAGGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTCAATATAAGTTTGATGGCGATTTTTTGCTTAGAAAAGTGTTTGCTTCCGTTCTTGCTGA
GGAGCTGAAAAAGTATAGAGGTTATCAATTTGTTGTCATTCCTCTAAGTCCTGAAAGATTGCTTGAGAGGGGGTTTAACC
AAGTCGAGGGTTTGGTTGAAGTAGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGTGCTAGTTCTTCT
AAAAGCCGTTTAGAAAGGTTAGCTACTGAAATTCCATTTTTTATTAAAGATGGTATCTCACTTCCTAAGAAGATTTTGCT
GATTGATGACATCTATACTACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGAAGAATCAGGTGCTTTGGATGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

78.182

100

0.782
  comFC/cflB Streptococcus mitis NCTC 12261

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae TIGR4

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae Rx1

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae D39

76.818

100

0.768
  comFC/cflB Streptococcus pneumoniae R6

76.818

100

0.768
  comFC Bacillus subtilis subsp. subtilis str. 168

36.123

100

0.373

Multiple sequence alignment