Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   BZG42_RS06490 Genome accession   NZ_CP019557
Coordinates   1374215..1376449 (-) Length   744 a.a.
NCBI ID   WP_155995986.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1369215..1381449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS06460 - 1369921..1370085 (-) 165 WP_006627244.1 transposon-encoded TnpW family protein -
  BZG42_RS06465 (BZG42_06540) - 1370212..1370835 (-) 624 WP_155995982.1 helix-turn-helix transcriptional regulator -
  BZG42_RS10255 (BZG42_06545) - 1371081..1371277 (-) 197 Protein_1234 recombinase -
  BZG42_RS06475 (BZG42_06550) sodA 1371463..1372074 (-) 612 WP_024532641.1 superoxide dismutase SodA -
  BZG42_RS06480 (BZG42_06555) holA 1372171..1373202 (-) 1032 WP_120172488.1 DNA polymerase III subunit delta -
  BZG42_RS06485 (BZG42_06560) - 1373458..1374069 (-) 612 WP_155995984.1 hypothetical protein -
  BZG42_RS06490 (BZG42_06565) comEC/celB 1374215..1376449 (-) 2235 WP_155995986.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BZG42_RS06495 (BZG42_06570) comEA 1376433..1377089 (-) 657 WP_024532637.1 helix-hairpin-helix domain-containing protein Machinery gene
  BZG42_RS06500 (BZG42_06575) - 1377174..1377917 (-) 744 WP_024532636.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  BZG42_RS06505 (BZG42_06580) - 1378107..1379552 (+) 1446 WP_155995988.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  BZG42_RS06510 (BZG42_06585) - 1379911..1380699 (+) 789 WP_155995990.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 744 a.a.        Molecular weight: 84934.80 Da        Isoelectric Point: 9.7221

>NTDB_id=216226 BZG42_RS06490 WP_155995986.1 1374215..1376449(-) (comEC/celB) [Streptococcus sp. DAT741]
MLRLDKLPCQPIHLAILAVVTYFTVHRFSMLTMSLLILLLVIYWRRQGKLTFFKMLPLLVLCGLFFGCQKLKWKQEEQAV
SKQVTAVEIVPDTININGDQLSFRARTDGQIYQGFYKLTSQKEQEYFQKLTALVQVEVKAETSLPSGQRNFNGFDYQAYL
KTQGIYRILTITTINKIVPIHSWNPMDWLSIWRRKALVFIKSNFPSPMSHYMTGLLFGELDSDFDQMSALYSSLGIIHLF
ALSGMQVGFFIDKFRWILLRLGLTKETVDQLQVPFSLVYAGLTGFSVSVVRSLIQKILSNLGLRKLDNFAATLFICFLVQ
PRFLLTVGGVLTFTYAFLLTVFDFEDLKQIKKVVVESLSISLGILPILMTYFFAFQPLSILLTFFFSFVFDVLLLPSLSV
IFILSPLVKITWVNSFFVLMEKMIIWVSDLGFRPLILGKPSDFILLVLLLGFFMLYDFHRQKKWLLGLSLLLTLLFFITK
HPLENEVTVVDIGQGDSIFLRDMQGRTVLIDVGGRVDFTVKEGWKARSRQANAERTLIPYLHSRGVDKIDSLVLTHTDTD
HVGDVLEVAKNFKIGKIYVSSGSLTVPSFVTTLKKINVPVHVVQVGDRLPIVDSYLEVLYPSRSGDGSNNDSIVLYGRLL
GINFLFTGDLEEGELELIKTYPKLSVDVLKAGHHGSKGSSYPEFLDHIGAKIALISAGEKNRYKHPHQETLERFEQKNMQ
IYRTDRQGAIRFRGWRSWSIETVR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=216226 BZG42_RS06490 WP_155995986.1 1374215..1376449(-) (comEC/celB) [Streptococcus sp. DAT741]
ATGTTACGGTTGGATAAGCTCCCCTGTCAGCCTATACATCTAGCCATTTTGGCGGTCGTGACCTACTTTACGGTTCACCG
TTTTTCGATGTTGACAATGAGCCTTCTGATATTATTATTGGTAATCTATTGGCGGCGTCAGGGGAAACTTACTTTTTTTA
AAATGCTGCCGCTTCTAGTCTTATGCGGTCTATTCTTCGGCTGCCAAAAGCTCAAATGGAAACAGGAAGAGCAGGCTGTT
TCAAAGCAAGTGACTGCTGTAGAGATTGTGCCGGATACTATAAATATCAATGGCGATCAGTTATCTTTCCGTGCTAGGAC
TGATGGTCAGATTTATCAAGGTTTCTATAAGCTAACTAGTCAGAAAGAACAGGAGTATTTCCAAAAGCTAACAGCTCTTG
TTCAGGTGGAGGTGAAGGCAGAGACGAGTCTCCCATCAGGTCAGCGGAATTTCAATGGTTTTGATTATCAAGCCTATTTA
AAAACACAGGGAATCTATCGAATCCTCACCATAACGACTATCAATAAGATTGTACCTATTCACTCTTGGAACCCTATGGA
TTGGTTGTCAATTTGGCGGAGAAAAGCCTTGGTTTTCATCAAATCTAATTTTCCTTCCCCCATGAGCCATTACATGACAG
GGTTGCTTTTTGGAGAGTTGGACAGTGACTTTGATCAGATGAGCGCCCTTTACTCCAGTCTGGGGATTATCCATCTCTTT
GCTCTATCAGGAATGCAGGTAGGTTTTTTCATTGATAAGTTTCGCTGGATTTTACTGCGTTTAGGCTTGACAAAGGAGAC
AGTTGATCAATTACAAGTCCCCTTTTCTTTGGTCTATGCTGGTTTGACAGGCTTTTCTGTATCAGTCGTCCGGTCTTTGA
TTCAGAAAATTTTGAGCAACCTGGGGCTTCGGAAGCTGGATAATTTTGCTGCAACACTCTTTATTTGTTTCTTGGTGCAG
CCTCGTTTTCTCCTGACAGTTGGAGGTGTCTTGACATTTACCTATGCTTTTTTGTTGACAGTCTTTGATTTTGAGGATTT
GAAGCAAATCAAAAAGGTTGTAGTGGAAAGTCTGAGTATTTCTCTGGGGATTCTGCCAATTCTGATGACCTATTTTTTCG
CTTTTCAGCCTCTATCTATTCTACTAACCTTCTTCTTTTCCTTTGTTTTTGATGTATTGCTTTTACCGAGTCTATCTGTA
ATTTTTATTTTATCTCCTTTGGTCAAGATTACTTGGGTCAATTCTTTCTTTGTTTTGATGGAGAAAATGATTATTTGGGT
ATCGGATTTGGGTTTTCGACCTTTGATACTAGGGAAACCGTCTGACTTCATCTTGTTAGTCTTGTTACTGGGATTTTTCA
TGCTTTACGATTTTCATAGACAGAAAAAATGGCTGTTAGGACTGAGTTTGCTCCTTACTCTGCTATTTTTCATTACAAAA
CATCCATTAGAAAATGAAGTAACTGTGGTAGATATCGGACAGGGAGATAGTATCTTTTTGCGAGATATGCAGGGGCGTAC
GGTTCTAATTGACGTTGGTGGACGGGTGGATTTTACGGTTAAGGAAGGCTGGAAGGCGCGATCCCGTCAGGCTAATGCAG
AGAGGACCTTGATTCCTTATCTACATAGTCGAGGTGTGGACAAGATTGACAGTCTGGTGTTGACGCACACCGATACTGAC
CATGTGGGCGATGTTCTGGAAGTAGCTAAGAATTTTAAGATCGGAAAAATCTATGTGTCTTCAGGTAGTTTGACAGTCCC
TAGCTTTGTAACCACCTTGAAAAAAATCAATGTACCTGTTCATGTGGTGCAGGTGGGTGATCGCCTACCGATCGTTGATT
CCTATTTGGAAGTGCTCTATCCGAGCCGATCGGGTGATGGTAGCAACAATGATTCTATTGTCCTCTATGGACGGCTCCTT
GGAATCAATTTTCTGTTTACGGGTGATCTGGAGGAGGGGGAATTAGAGCTGATAAAAACCTATCCCAAATTGTCAGTTGA
TGTTCTAAAAGCCGGACACCATGGTTCAAAAGGTTCTTCTTATCCTGAATTTTTAGACCATATTGGAGCTAAGATTGCCT
TAATCTCGGCTGGCGAGAAAAATCGCTACAAGCATCCCCATCAAGAAACCTTGGAGCGTTTTGAACAGAAGAATATGCAA
ATCTATCGGACAGACCGGCAAGGAGCTATTCGCTTTAGAGGTTGGCGAAGTTGGTCAATTGAAACGGTGAGATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

53.414

100

0.536

  comEC/celB Streptococcus mitis NCTC 12261

52.83

99.731

0.527

  comEC/celB Streptococcus pneumoniae TIGR4

51.682

99.866

0.516

  comEC/celB Streptococcus pneumoniae Rx1

51.144

99.866

0.511

  comEC/celB Streptococcus pneumoniae D39

51.144

99.866

0.511

  comEC/celB Streptococcus pneumoniae R6

51.144

99.866

0.511

  comEC Lactococcus lactis subsp. cremoris KW2

47.233

99.597

0.47


Multiple sequence alignment