Detailed information NTG0021500

Bioinformatically predicted

Overview

• Name: comA/nlmT
• Type: Regulator
• Locus tag: SP_RS13725
• Genome accession: NC_003028
• Coordinates: 509280..509927 (-)
• Length: 215 a.a.
• NCBI ID: WP_078064020.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae TIGR4
• Function: transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 504280..514927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SP_RS02565 (SP_0524)	-	504613..504942 (-)	330	WP_000132572.1	hypothetical protein	-
SP_RS02570 (SP_0525)	-	505218..505556 (+)	339	WP_000876675.1	LytTR family DNA-binding domain-containing protein	-
SP_RS02575 (SP_0526)	comE/blpR	505561..506298 (+)	738	WP_001219120.1	response regulator transcription factor	Regulator
SP_RS02580 (SP_0527)	-	506312..507652 (+)	1341	WP_001017646.1	sensor histidine kinase	-
SP_RS02585 (SP_0528)	blpC	507723..507851 (-)	129	WP_000358815.1	quorum-sensing system pheromone BlpC	-
SP_RS02590 (SP_0529)	-	507908..509269 (-)	1362	WP_001069075.1	bacteriocin secretion accessory protein	-
SP_RS13725	comA/nlmT	509280..509927 (-)	648	WP_078064020.1	ATP-binding cassette domain-containing protein	Regulator
SP_RS13730	comA/nlmT	509943..510956 (-)	1014	WP_307772067.1	ABC transporter transmembrane domain-containing protein	Regulator
SP_RS13735	comA/nlmT	510850..511437 (-)	588	WP_000205166.1	cysteine peptidase family C39 domain-containing protein	Regulator
SP_RS02610 (SP_0531)	blpI	511719..511916 (+)	198	WP_001093259.1	bacteriocin-like peptide BlpI	-
SP_RS02615 (SP_0532)	blpJ	512383..512652 (+)	270	WP_001093248.1	bacteriocin-like peptide BlpJ	-
SP_RS02620 (SP_0533)	blpU	512721..512951 (+)	231	WP_000379967.1	bacteriocin-like peptide BlpU	-
SP_RS02625	-	512954..513073 (+)	120	WP_000346296.1	PncF family bacteriocin immunity protein	-
SP_RS13000 (SP_0535)	-	513370..513534 (+)	165	WP_000727118.1	hypothetical protein	-
SP_RS02640 (SP_0536)	-	513531..513935 (+)	405	WP_000846943.1	hypothetical protein	-

Sequence

Protein

• Length: 215 a.a.
• Molecular weight: 23976.78 Da
• Isoelectric Point: 9.2946

>NTDB_id=21500 SP_RS13725 WP_078064020.1 509280..509927(-) (comA/nlmT) [Streptococcus pneumoniae TIGR4]
MNLTIKQGDKVSLVGVSGSGKTTLAKMIVNFFEPYKGHISINHQDIKNIDKKVLRRHINYLPQQAYIFNGSILENLTLGG
NHMISQEDILKACEVAEIRQDIERMPMGYQTQLSDGAGLSGGQKQRIALARALLTKSPVLILDEATSGLDVLTEKKVIDN
LMSLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Nucleotide

• Length: 648 bp

>NTDB_id=21500 SP_RS13725 WP_078064020.1 509280..509927(-) (comA/nlmT) [Streptococcus pneumoniae TIGR4]
ATTAATCTCACGATTAAACAAGGAGATAAGGTTAGCCTAGTTGGAGTTAGTGGTTCTGGTAAAACAACTTTAGCCAAAAT
GATTGTCAATTTCTTTGAACCCTACAAAGGGCATATTTCCATCAATCATCAGGATATTAAAAACATTGATAAAAAAGTCT
TGCGCCGTCATATTAATTACCTACCCCAACAAGCCTATATCTTTAATGGCTCTATTTTGGAAAACTTAACCTTGGGCGGT
AATCATATGATTAGTCAAGAAGATATTCTAAAAGCTTGTGAAGTAGCTGAAATCCGTCAAGACATTGAAAGAATGCCTAT
GGGCTATCAAACTCAGCTCTCTGATGGAGCTGGTCTATCAGGAGGACAGAAGCAACGAATCGCTCTCGCTCGTGCTCTTT
TAACTAAATCTCCTGTTTTAATACTAGATGAAGCTACTAGCGGTCTTGATGTCTTGACTGAGAAAAAGGTTATAGATAAT
CTTATGTCTCTAACTGATAAAACCATTCTCTTTGTAGCCCATCGTCTCAGTATAGCCGAACGAACCAACCGTGTCATTGT
TCTTGACCAGGGGAAAATCATTGAAGTTGGTAGTCACCAAGAGTTAATGCAGGCGCAAGGTTTCTACCATCATCTATTCA
ATAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (1-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA/nlmT	Streptococcus mutans UA159	71.495	99.535	0.712
comA	Streptococcus mitis NCTC 12261	66.977	100	0.67
comA	Streptococcus pneumoniae Rx1	66.512	100	0.665
comA	Streptococcus pneumoniae D39	66.512	100	0.665
comA	Streptococcus pneumoniae R6	66.512	100	0.665
comA	Streptococcus mitis SK321	66.512	100	0.665
comA	Streptococcus pneumoniae TIGR4	66.047	100	0.66
comA	Streptococcus gordonii str. Challis substr. CH1	66.047	100	0.66
rcrQ	Streptococcus mutans UA159	38.679	98.605	0.381