Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | BST96_RS06095 | Genome accession | NZ_CP019343 |
| Coordinates | 1355421..1356572 (-) | Length | 383 a.a. |
| NCBI ID | WP_085757838.1 | Uniprot ID | A0A1X9NBB0 |
| Organism | Oceanicoccus sagamiensis strain NBRC 107125 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1350421..1361572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BST96_RS06065 (BST96_06075) | pilH | 1350778..1351140 (-) | 363 | WP_085757832.1 | twitching motility response regulator PilH | - |
| BST96_RS06070 (BST96_06080) | pilG | 1351239..1351628 (-) | 390 | WP_085757833.1 | twitching motility response regulator PilG | Regulator |
| BST96_RS06075 (BST96_06085) | gshB | 1352021..1352977 (+) | 957 | WP_085757834.1 | glutathione synthase | - |
| BST96_RS06080 (BST96_06090) | - | 1353073..1353981 (+) | 909 | WP_085757835.1 | energy transducer TonB | - |
| BST96_RS06085 (BST96_06095) | - | 1354297..1354851 (+) | 555 | WP_420814628.1 | YqgE/AlgH family protein | - |
| BST96_RS06090 (BST96_06100) | ruvX | 1354855..1355283 (+) | 429 | WP_085757837.1 | Holliday junction resolvase RuvX | - |
| BST96_RS06095 (BST96_06105) | pilU | 1355421..1356572 (-) | 1152 | WP_085757838.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| BST96_RS06100 (BST96_06110) | pilT | 1356619..1357653 (-) | 1035 | WP_085757839.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| BST96_RS06105 (BST96_06115) | - | 1357842..1358528 (+) | 687 | WP_085757840.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| BST96_RS06110 (BST96_06120) | proC | 1358594..1359424 (+) | 831 | WP_085757841.1 | pyrroline-5-carboxylate reductase | - |
| BST96_RS06115 (BST96_06125) | - | 1359474..1360061 (+) | 588 | WP_085757842.1 | YggT family protein | - |
| BST96_RS06120 (BST96_06130) | metX | 1360097..1361269 (+) | 1173 | WP_085757843.1 | homoserine O-succinyltransferase MetX | - |
Sequence
Protein
Download Length: 383 a.a. Molecular weight: 42635.63 Da Isoelectric Point: 5.9369
>NTDB_id=214953 BST96_RS06095 WP_085757838.1 1355421..1356572(-) (pilU) [Oceanicoccus sagamiensis strain NBRC 107125]
MDIDKLLQIMVEKGASDLFITAGVPPSIKVHGRVLPVTTSPLSPEKTRETVLGVMNESQRRDFVRDKECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETTIPRIDDLGLPDVIKDLSMVKRGLVVFVGATGAGKSTSLASMIGHRNRNSKGHIISVED
PIEYIHQHEGCIVTQREVGIDTDSFEIGLKNMLRQAPDVIMIGEVRTRETMEHAITFAETGHLCLCTLHANNANQALDRI
LHFFPADRHRQLWMDLSLNLRAMVAQQLIPTPDGKGRRSCVEILINTPLAQDLIRKGEVHALKDLMSKSNEQGMQTFDQA
LYELYQSGEITYEDALSHADSANDLRLMIKLGDENSSSQIDAIAGDLTLEDESESDQGQTFSR
MDIDKLLQIMVEKGASDLFITAGVPPSIKVHGRVLPVTTSPLSPEKTRETVLGVMNESQRRDFVRDKECNFAISARGIGR
FRVSAFYQRNLAGMVLRRIETTIPRIDDLGLPDVIKDLSMVKRGLVVFVGATGAGKSTSLASMIGHRNRNSKGHIISVED
PIEYIHQHEGCIVTQREVGIDTDSFEIGLKNMLRQAPDVIMIGEVRTRETMEHAITFAETGHLCLCTLHANNANQALDRI
LHFFPADRHRQLWMDLSLNLRAMVAQQLIPTPDGKGRRSCVEILINTPLAQDLIRKGEVHALKDLMSKSNEQGMQTFDQA
LYELYQSGEITYEDALSHADSANDLRLMIKLGDENSSSQIDAIAGDLTLEDESESDQGQTFSR
Nucleotide
Download Length: 1152 bp
>NTDB_id=214953 BST96_RS06095 WP_085757838.1 1355421..1356572(-) (pilU) [Oceanicoccus sagamiensis strain NBRC 107125]
GTGGATATTGATAAGTTATTACAAATTATGGTGGAAAAAGGGGCGTCGGATTTATTTATCACCGCCGGTGTACCTCCGTC
TATAAAAGTCCATGGTCGCGTACTGCCCGTGACTACCAGTCCGCTAAGTCCGGAAAAAACCCGCGAGACAGTCTTGGGGG
TGATGAACGAATCCCAGCGCAGAGACTTTGTGCGCGATAAAGAATGTAATTTTGCGATTAGTGCTCGGGGTATTGGCCGT
TTTCGTGTCAGTGCTTTTTACCAGCGTAATCTGGCGGGCATGGTGTTGCGGCGTATTGAAACCACTATCCCGCGTATTGA
TGATTTAGGTTTGCCGGATGTGATTAAAGACCTATCCATGGTTAAACGAGGTTTGGTGGTCTTTGTCGGGGCAACCGGTG
CGGGTAAGTCGACGTCTCTGGCTTCTATGATCGGGCATCGTAATAGAAACTCCAAAGGCCATATTATTTCTGTCGAAGAT
CCGATTGAATATATTCACCAGCATGAAGGTTGTATTGTTACTCAACGTGAAGTTGGTATTGATACCGACAGTTTTGAAAT
CGGCTTGAAAAATATGTTACGTCAGGCCCCTGACGTGATTATGATTGGTGAGGTGCGTACCCGTGAAACGATGGAGCACG
CGATCACCTTTGCTGAAACCGGTCACCTCTGCTTATGTACCTTGCACGCTAACAATGCTAACCAGGCGCTGGATAGAATT
TTGCACTTTTTCCCCGCTGATCGTCATCGCCAGTTATGGATGGATCTGTCGCTCAATTTACGGGCGATGGTGGCCCAGCA
ATTAATTCCAACACCGGATGGCAAAGGTCGTCGTTCCTGTGTAGAAATTCTGATTAATACCCCTTTAGCGCAGGACTTAA
TCCGCAAAGGCGAAGTGCATGCCTTAAAAGATTTGATGTCAAAATCTAACGAGCAAGGTATGCAGACTTTTGATCAGGCT
TTGTATGAGTTGTATCAGTCCGGAGAAATTACTTATGAAGATGCTTTGTCTCATGCTGACTCGGCGAATGACTTGCGCTT
AATGATTAAGTTGGGGGATGAAAATAGCAGCTCACAGATTGATGCTATTGCTGGCGACTTGACCCTTGAAGATGAATCAG
AAAGCGATCAGGGTCAGACCTTTTCTCGATAA
GTGGATATTGATAAGTTATTACAAATTATGGTGGAAAAAGGGGCGTCGGATTTATTTATCACCGCCGGTGTACCTCCGTC
TATAAAAGTCCATGGTCGCGTACTGCCCGTGACTACCAGTCCGCTAAGTCCGGAAAAAACCCGCGAGACAGTCTTGGGGG
TGATGAACGAATCCCAGCGCAGAGACTTTGTGCGCGATAAAGAATGTAATTTTGCGATTAGTGCTCGGGGTATTGGCCGT
TTTCGTGTCAGTGCTTTTTACCAGCGTAATCTGGCGGGCATGGTGTTGCGGCGTATTGAAACCACTATCCCGCGTATTGA
TGATTTAGGTTTGCCGGATGTGATTAAAGACCTATCCATGGTTAAACGAGGTTTGGTGGTCTTTGTCGGGGCAACCGGTG
CGGGTAAGTCGACGTCTCTGGCTTCTATGATCGGGCATCGTAATAGAAACTCCAAAGGCCATATTATTTCTGTCGAAGAT
CCGATTGAATATATTCACCAGCATGAAGGTTGTATTGTTACTCAACGTGAAGTTGGTATTGATACCGACAGTTTTGAAAT
CGGCTTGAAAAATATGTTACGTCAGGCCCCTGACGTGATTATGATTGGTGAGGTGCGTACCCGTGAAACGATGGAGCACG
CGATCACCTTTGCTGAAACCGGTCACCTCTGCTTATGTACCTTGCACGCTAACAATGCTAACCAGGCGCTGGATAGAATT
TTGCACTTTTTCCCCGCTGATCGTCATCGCCAGTTATGGATGGATCTGTCGCTCAATTTACGGGCGATGGTGGCCCAGCA
ATTAATTCCAACACCGGATGGCAAAGGTCGTCGTTCCTGTGTAGAAATTCTGATTAATACCCCTTTAGCGCAGGACTTAA
TCCGCAAAGGCGAAGTGCATGCCTTAAAAGATTTGATGTCAAAATCTAACGAGCAAGGTATGCAGACTTTTGATCAGGCT
TTGTATGAGTTGTATCAGTCCGGAGAAATTACTTATGAAGATGCTTTGTCTCATGCTGACTCGGCGAATGACTTGCGCTT
AATGATTAAGTTGGGGGATGAAAATAGCAGCTCACAGATTGATGCTATTGCTGGCGACTTGACCCTTGAAGATGAATCAG
AAAGCGATCAGGGTCAGACCTTTTCTCGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
75.328 |
99.478 |
0.749 |
| pilU | Acinetobacter baylyi ADP1 |
62.254 |
92.689 |
0.577 |
| pilU | Vibrio cholerae strain A1552 |
53.388 |
96.345 |
0.514 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.658 |
88.512 |
0.386 |