Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RS694_RS01170 Genome accession   NZ_CP019239
Coordinates   238837..240387 (-) Length   516 a.a.
NCBI ID   WP_029707893.1    Uniprot ID   -
Organism   Rhodoferax saidenbachensis strain DSM 22694     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 233837..245387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS694_RS01145 (RS694_01145) - 233968..234582 (+) 615 WP_029707900.1 hypothetical protein -
  RS694_RS01150 (RS694_01150) - 234612..235037 (+) 426 WP_152528823.1 hypothetical protein -
  RS694_RS01155 (RS694_01155) - 235049..236782 (+) 1734 WP_051391893.1 pilus (MSHA type) biogenesis protein MshL -
  RS694_RS01160 (RS694_01160) - 236782..237717 (+) 936 WP_051391892.1 ExeA family protein -
  RS694_RS20355 - 237714..238784 (+) 1071 WP_152528822.1 hypothetical protein -
  RS694_RS01170 (RS694_01170) comM 238837..240387 (-) 1551 WP_029707893.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RS694_RS01175 (RS694_01175) glnK 240639..240977 (+) 339 WP_029707891.1 P-II family nitrogen regulator -
  RS694_RS01180 (RS694_01180) - 240997..242514 (+) 1518 WP_029707889.1 ammonium transporter -
  RS694_RS01185 (RS694_01185) - 242723..243589 (+) 867 WP_029707887.1 aldose 1-epimerase -
  RS694_RS01190 (RS694_01190) - 243586..244497 (+) 912 WP_029707886.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 54396.11 Da        Isoelectric Point: 7.1913

>NTDB_id=214328 RS694_RS01170 WP_029707893.1 238837..240387(-) (comM) [Rhodoferax saidenbachensis strain DSM 22694]
MSLSLVQSRALLGLEATQVTVEVHLANGLPSFTLVGLADVEVKEARERVRCAIQNSQLEFPLTKRITVNLAPADLPKDSG
RLDLPIALGILAASGQIDGAKLAGYEFAGELSLSGELRPVRGALATALALHMGTVGAKLVLPPGSAEEAALVPGAQVYRA
RHLLDVVRHFAPEGGANVLPPDAEEADDGWAQMSALAPVLRAASADMADVKGQAAAKRALEIAAAGGHSLLLVGAPGSGK
SMLAQRFAGLLPEMSSEEALQSAAIGSLTGRFSMERYGQRPTSSPHHTASAVALVGGGSPPRPGEISMAHHGILFLDEIA
EFSRAALEALREPLETGTITIARAAHRSEFPARFQLIGAMNPCPCGFQGSSLRSCRCTPDQIHRYQSKLSGPLMDRIDLH
VEVPSLPSTELLNTPPGESTADIRQRSTAARARAQLRQGKTNQALAGQEIDTHAQLDPAALKFLQSASAQLGWSARGTHR
ALKIARTIADLAGSDTTELVHVAEAMQYRRVLRQSI

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=214328 RS694_RS01170 WP_029707893.1 238837..240387(-) (comM) [Rhodoferax saidenbachensis strain DSM 22694]
ATGAGCTTATCTTTGGTGCAAAGCCGTGCCCTGCTGGGCCTGGAGGCCACCCAGGTCACCGTGGAAGTCCATCTCGCGAA
CGGGTTACCCAGCTTCACGCTGGTGGGTCTGGCCGATGTAGAGGTCAAGGAGGCGCGCGAGCGGGTGCGCTGTGCCATCC
AGAACTCACAGCTTGAGTTCCCTTTAACCAAGCGTATTACCGTGAATCTGGCGCCGGCCGATTTGCCCAAAGATTCTGGC
CGCCTGGATTTACCCATCGCTCTGGGCATATTGGCGGCCAGTGGCCAGATCGACGGCGCCAAACTCGCCGGGTATGAGTT
TGCGGGTGAGTTGTCACTGTCCGGGGAGTTGCGGCCCGTTCGTGGTGCACTGGCGACGGCTTTGGCCTTGCATATGGGCA
CAGTCGGGGCCAAACTGGTACTGCCGCCTGGTAGTGCGGAAGAAGCGGCCCTGGTGCCGGGTGCACAGGTTTACCGGGCC
AGGCATCTGCTGGACGTTGTGCGCCACTTTGCGCCGGAAGGCGGAGCGAATGTGTTGCCACCCGACGCCGAAGAAGCCGA
TGACGGCTGGGCCCAGATGTCAGCCCTGGCACCGGTCCTGCGTGCGGCCAGTGCAGACATGGCCGACGTGAAAGGCCAGG
CCGCAGCCAAACGGGCGCTGGAGATTGCCGCCGCAGGTGGGCACAGTCTGCTGCTGGTGGGCGCTCCAGGCTCCGGCAAG
TCCATGCTGGCCCAGCGGTTTGCCGGACTGTTGCCAGAAATGTCGAGTGAGGAGGCACTGCAAAGCGCCGCCATCGGCAG
CCTGACCGGACGGTTCTCCATGGAGCGCTACGGGCAAAGGCCCACATCCAGCCCGCACCATACGGCCAGCGCGGTGGCAT
TGGTCGGTGGCGGATCGCCTCCGCGCCCCGGAGAAATCTCCATGGCGCACCATGGAATTTTGTTCCTCGACGAAATTGCA
GAGTTCTCCCGCGCCGCTTTAGAGGCTTTGCGTGAACCCCTGGAGACCGGCACCATCACGATTGCCAGAGCCGCACACCG
ATCAGAGTTTCCCGCCCGGTTCCAGTTGATAGGCGCCATGAATCCCTGTCCGTGCGGATTTCAGGGCTCCTCCCTGCGCA
GTTGCCGCTGCACGCCGGACCAGATTCACCGCTACCAGTCCAAGCTCAGCGGCCCTTTGATGGACCGCATCGACCTGCAT
GTGGAAGTACCTTCCCTGCCGTCCACCGAGCTGCTGAACACCCCGCCGGGCGAAAGCACCGCCGACATCCGCCAGCGCAG
CACCGCCGCGCGCGCGCGGGCGCAACTGCGGCAGGGCAAAACCAACCAAGCGCTGGCCGGGCAGGAAATTGACACCCACG
CACAGCTCGACCCTGCCGCTCTCAAGTTTCTGCAATCCGCATCAGCGCAATTAGGCTGGTCGGCGCGCGGAACACACCGC
GCACTGAAGATTGCCCGCACCATTGCGGACCTCGCAGGTTCGGACACCACCGAACTGGTGCATGTGGCGGAAGCCATGCA
GTACCGCCGCGTTTTGCGCCAAAGCATCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-410)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(417-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.674

100

0.51
  comM Vibrio campbellii strain DS40M4

49.038

100

0.494
  comM Legionella pneumophila str. Paris

48.35

99.806

0.483
  comM Legionella pneumophila strain ERS1305867

48.35

99.806

0.483
  comM Glaesserella parasuis strain SC1401

48.538

99.419

0.483
  comM Haemophilus influenzae Rd KW20

48.062

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.892

100

0.421

Multiple sequence alignment