Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BV404_RS09170 Genome accession   NZ_CP019118
Coordinates   1960356..1960652 (-) Length   98 a.a.
NCBI ID   WP_075988717.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 12605     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1955356..1965652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV404_RS09145 lapB 1955600..1956769 (-) 1170 WP_024374735.1 lipopolysaccharide assembly protein LapB -
  BV404_RS09150 - 1956782..1957066 (-) 285 WP_020327818.1 LapA family protein -
  BV404_RS09155 ihfB 1957206..1957490 (-) 285 WP_020430001.1 integration host factor subunit beta -
  BV404_RS09160 rpsA 1957721..1959391 (-) 1671 WP_020327821.1 30S ribosomal protein S1 -
  BV404_RS09165 cmk 1959496..1960176 (-) 681 WP_024374736.1 (d)CMP kinase -
  BV404_RS09170 comEA 1960356..1960652 (-) 297 WP_075988717.1 ComEA family DNA-binding protein Machinery gene
  BV404_RS09175 ppiD 1960791..1962650 (-) 1860 WP_075988718.1 peptidylprolyl isomerase -
  BV404_RS09180 - 1962806..1963078 (-) 273 WP_004726502.1 HU family DNA-binding protein -
  BV404_RS09185 lon 1963273..1965624 (-) 2352 WP_020327825.1 endopeptidase La -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10622.36 Da        Isoelectric Point: 8.6059

>NTDB_id=213272 BV404_RS09170 WP_075988717.1 1960356..1960652(-) (comEA) [Vibrio fluvialis strain 12605]
MKIHKFWLAILLAVTWPVSHSWAEGNVSATEGVEITVNINTAPAEELATLLKGIGLKKAQAIVDYREANGAFKSKEDLTQ
VKGIGPAIVAQNDKRILL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=213272 BV404_RS09170 WP_075988717.1 1960356..1960652(-) (comEA) [Vibrio fluvialis strain 12605]
ATGAAAATTCACAAATTTTGGTTGGCGATTCTCCTGGCTGTCACTTGGCCGGTATCTCACAGTTGGGCGGAAGGAAATGT
TTCTGCTACAGAAGGGGTCGAGATAACTGTCAATATCAATACGGCACCAGCGGAAGAGTTGGCGACTTTACTCAAAGGTA
TCGGCCTGAAAAAAGCCCAAGCAATAGTTGACTATCGTGAGGCCAATGGTGCGTTCAAATCTAAAGAAGATCTGACGCAA
GTGAAAGGCATTGGGCCAGCTATCGTTGCTCAGAATGACAAACGTATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(36-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

61.616

100

0.622
  comEA Vibrio cholerae strain A1552

61.616

100

0.622
  comEA Vibrio parahaemolyticus RIMD 2210633

57.447

95.918

0.551
  comEA Vibrio campbellii strain DS40M4

55.208

97.959

0.541
  comEA/comE1 Glaesserella parasuis strain SC1401

53.425

74.49

0.398
  comEA Legionella pneumophila str. Paris

41.489

95.918

0.398
  comEA Legionella pneumophila strain ERS1305867

41.489

95.918

0.398

Multiple sequence alignment