Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NP7_RS02760 Genome accession   NZ_CP024443
Coordinates   608537..610897 (+) Length   786 a.a.
NCBI ID   WP_100269608.1    Uniprot ID   -
Organism   Moraxella osloensis strain NP7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603537..615897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP7_RS02740 (NP7_02735) pilM 605512..606564 (+) 1053 WP_100269605.1 pilus assembly protein PilM Machinery gene
  NP7_RS02745 (NP7_02740) pilN 606564..607235 (+) 672 WP_100269606.1 PilN domain-containing protein Machinery gene
  NP7_RS02750 (NP7_02745) comO/pilO 607238..607999 (+) 762 WP_199488893.1 type 4a pilus biogenesis protein PilO Machinery gene
  NP7_RS02755 (NP7_02750) comL/pilP 607986..608519 (+) 534 WP_100269607.1 pilus assembly protein PilP Machinery gene
  NP7_RS02760 (NP7_02755) pilQ 608537..610897 (+) 2361 WP_100269608.1 type IV pilus secretin family protein Machinery gene
  NP7_RS02765 (NP7_02760) - 611006..611542 (+) 537 WP_100269609.1 shikimate kinase -
  NP7_RS02770 (NP7_02765) aroB 611611..612708 (+) 1098 WP_100269610.1 3-dehydroquinate synthase -
  NP7_RS02775 (NP7_02770) - 612778..613761 (+) 984 WP_199488894.1 hypothetical protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 84645.47 Da        Isoelectric Point: 6.2363

>NTDB_id=212875 NP7_RS02760 WP_100269608.1 608537..610897(+) (pilQ) [Moraxella osloensis strain NP7]
MNFNAYPFRTSTSKLAVAMSAMLVSSSVFAADTIRNISVTTPSAMLTELNIDFANSAVTPTAYELTSPTRLVLDFPNVNN
QIASRMQTYNKGYVNNVTTLTNDSMTRMIIELSNQATYSTRVVNNRLVVSMQPKGSTAAITTPAITTVATNPAIVTPVVT
SPVVENQPAVVVTEPVPAPVIVTPPPVVVQTPPPVAVVTQTPKAAPPANTMVVKVNPLLNPAAAVVQQYNYDGLAAINFN
GTSNGGGNISINLVNDSIPVDVQRMGDELVIRLTGATIPSRLQKQMTVGNGLVRDVIATNQGRNGVIRVAMTGDYDYKAF
QTGNQLNITIDPPKRLREPTIEERTYSGAPLSLEFQDVSVRTILEVLAQHTNTNIVASDSVSGNITLRLINVPWDQALDI
ILKSKNLDKRVNGNVIWVAPAAELAKQEADELKAQQEKKVLDPLRTEYIRLNYAKAENVRTLIEAGRATSDRSSANTSLL
TDRGTVTIDTRTNTLIVKDTAETISNIRDLISKIDIAVKQVMIEARIVSASDAFTKELGVKWGILSQGAASNRNLLVGGS
EQTIWDLKKYSMKSMTVNGQTVDYPSYTITRPDNLSVNLGAANPAGQIAFGLLSISDLLLDLELSAMQADNKGEVISSPK
VLTSDKQTAKIMSGTQIPYQEASASGATSTSFKDAALSLEVTPNITPEGKIGLELLIENGTPNYSTNPVSIDKDSINTSV
VVDDGQTVVLGGIFKNILGNNVTKVPFLGDLPYVDRFFKRTSKTNNKQELLIFVTPKLVNDTGRIN

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=212875 NP7_RS02760 WP_100269608.1 608537..610897(+) (pilQ) [Moraxella osloensis strain NP7]
ATGAATTTTAATGCCTATCCATTTCGAACTTCAACGTCTAAGCTAGCGGTAGCGATGAGTGCGATGTTAGTATCTAGCAG
CGTGTTTGCAGCGGATACGATTAGAAATATCTCGGTTACCACGCCGAGTGCTATGTTAACAGAGCTCAATATCGACTTTG
CTAATAGTGCTGTGACCCCGACGGCTTATGAACTTACTTCACCCACACGACTGGTGTTGGATTTCCCCAATGTAAATAAT
CAAATTGCATCACGGATGCAAACTTATAACAAAGGCTATGTCAACAATGTCACCACGCTGACCAATGACAGTATGACACG
TATGATTATTGAGTTGTCAAATCAAGCGACCTATAGTACGCGTGTGGTCAATAATCGCCTCGTGGTCTCCATGCAGCCGA
AGGGAAGCACCGCTGCAATAACCACCCCTGCAATAACCACCGTAGCTACCAATCCAGCAATCGTTACACCTGTGGTGACT
AGCCCTGTGGTTGAGAATCAGCCTGCTGTCGTCGTGACTGAACCTGTGCCTGCCCCTGTGATTGTCACGCCGCCGCCTGT
GGTCGTGCAAACGCCGCCACCTGTTGCCGTCGTGACCCAAACACCAAAAGCCGCCCCACCCGCCAATACCATGGTAGTCA
AAGTCAATCCTTTATTAAATCCTGCTGCCGCGGTTGTCCAACAATATAACTATGATGGTCTAGCGGCGATTAATTTTAAT
GGTACCTCGAACGGCGGCGGTAATATTAGCATTAATTTGGTAAATGACAGCATCCCTGTGGATGTGCAGCGTATGGGTGA
TGAATTAGTCATTCGTCTGACAGGCGCTACCATTCCAAGTCGCCTACAAAAACAAATGACCGTGGGTAATGGCTTGGTGC
GTGATGTTATCGCAACCAACCAAGGACGAAATGGCGTGATTCGCGTTGCCATGACGGGCGATTATGACTATAAAGCCTTT
CAAACAGGTAATCAGCTAAATATCACTATCGATCCCCCCAAACGTCTGCGCGAGCCGACCATTGAAGAACGTACCTACAG
CGGGGCACCTTTATCACTAGAGTTTCAAGATGTCAGCGTGCGGACGATTTTAGAAGTGTTGGCACAACATACCAATACCA
ATATCGTTGCCAGTGACAGCGTCAGTGGTAATATTACCTTGCGTCTGATTAACGTGCCTTGGGATCAAGCCTTAGACATT
ATCCTAAAAAGTAAAAATTTGGATAAACGGGTTAATGGTAATGTAATTTGGGTGGCACCTGCCGCAGAACTTGCCAAACA
AGAAGCCGATGAGTTAAAAGCGCAACAAGAGAAAAAAGTATTAGACCCCCTGCGTACCGAATATATTCGACTCAACTATG
CCAAAGCAGAAAATGTACGAACACTCATTGAAGCAGGCAGAGCAACATCCGATCGTTCGAGCGCCAATACCTCACTGTTA
ACAGACAGAGGTACAGTCACAATCGATACCCGAACCAATACTTTGATTGTTAAAGACACCGCTGAAACCATCAGCAACAT
CCGTGATTTGATTAGTAAAATCGATATCGCTGTCAAACAAGTGATGATTGAAGCTCGTATTGTGAGTGCTAGTGATGCTT
TCACCAAGGAGCTTGGAGTTAAATGGGGTATTTTATCGCAAGGCGCGGCAAGTAATCGTAATTTATTAGTGGGTGGTTCT
GAGCAGACCATATGGGATCTTAAGAAATATAGTATGAAATCAATGACCGTAAATGGGCAAACTGTTGATTATCCTTCATA
CACTATTACACGACCTGACAACCTTAGTGTCAATTTAGGTGCAGCTAACCCTGCAGGACAAATTGCCTTTGGCTTGTTGA
GCATTTCAGATTTACTATTAGATTTAGAATTGTCAGCCATGCAAGCGGATAACAAAGGCGAAGTCATCTCCAGTCCAAAA
GTGCTAACTTCTGATAAGCAAACCGCCAAAATCATGTCAGGCACACAAATCCCTTATCAAGAAGCCTCTGCCAGTGGCGC
GACATCTACGTCCTTTAAAGATGCCGCACTTAGCTTAGAAGTTACTCCAAATATAACACCTGAAGGAAAGATAGGATTAG
AGCTATTAATTGAGAATGGTACACCTAATTATTCTACTAATCCAGTTTCTATAGATAAGGATTCGATTAATACGAGTGTA
GTTGTTGATGATGGTCAGACTGTAGTTTTGGGTGGAATATTTAAAAATATTTTAGGAAATAATGTTACAAAAGTGCCTTT
CTTAGGAGATTTACCTTATGTTGATCGCTTCTTTAAGCGCACCTCAAAAACCAATAACAAGCAAGAATTATTGATTTTTG
TGACCCCAAAATTGGTGAATGACACAGGTCGTATCAATTAA

Domains

Predicted by InterProScan.

AMIN domain (AMIN)

(240-330)

AMIN domain (AMIN)

(48-130)

Bacterial type II/III secretion system short domain (Secretin_N)

(447-520)

Bacterial type II and III secretion system protein (Secretin)

(626-779)

Secretin and TonB N terminus short domain (STN)

(374-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

50.081

78.244

0.392
  pilQ Acinetobacter baumannii D1279779

50.081

78.244

0.392
  comQ/pilQ Acinetobacter baylyi ADP1

50.662

76.845

0.389
  pilQ Pseudomonas aeruginosa PAK

36.189

99.491

0.36