Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO/pilO   Type   Machinery gene
Locus tag   NP7_RS02750 Genome accession   NZ_CP024443
Coordinates   607238..607999 (+) Length   253 a.a.
NCBI ID   WP_199488893.1    Uniprot ID   -
Organism   Moraxella osloensis strain NP7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 602238..612999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP7_RS02735 (NP7_02730) - 602574..605300 (-) 2727 WP_100269604.1 penicillin-binding protein 1A -
  NP7_RS02740 (NP7_02735) pilM 605512..606564 (+) 1053 WP_100269605.1 pilus assembly protein PilM Machinery gene
  NP7_RS02745 (NP7_02740) pilN 606564..607235 (+) 672 WP_100269606.1 PilN domain-containing protein Machinery gene
  NP7_RS02750 (NP7_02745) comO/pilO 607238..607999 (+) 762 WP_199488893.1 type 4a pilus biogenesis protein PilO Machinery gene
  NP7_RS02755 (NP7_02750) comL/pilP 607986..608519 (+) 534 WP_100269607.1 pilus assembly protein PilP Machinery gene
  NP7_RS02760 (NP7_02755) pilQ 608537..610897 (+) 2361 WP_100269608.1 type IV pilus secretin family protein Machinery gene
  NP7_RS02765 (NP7_02760) - 611006..611542 (+) 537 WP_100269609.1 shikimate kinase -
  NP7_RS02770 (NP7_02765) aroB 611611..612708 (+) 1098 WP_100269610.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28763.94 Da        Isoelectric Point: 9.4352

>NTDB_id=212873 NP7_RS02750 WP_199488893.1 607238..607999(+) (comO/pilO) [Moraxella osloensis strain NP7]
MKLTNPLKRPRLVKKPVQITAKKSFDVKAFTESFKSLDQNNYGSWPVPVKVTVLLFMVAVIAFLTWFLPISSKREEIAAA
EAEQQTLLEQYRQKESKARHLKEYQAQVSKMQSDFKELLNQLPKDTRISDLVDGINMVGVGSNVKFQDIKVEPEVSQEFF
IEQPIRIAALGDYHQFGSFISGLAKLPRIITLHDFEVTNPSPSLDKLPETNLVLNVKTYRSKELNEEELKKAQQDNQKNP
AGSDNKEANNGDK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=212873 NP7_RS02750 WP_199488893.1 607238..607999(+) (comO/pilO) [Moraxella osloensis strain NP7]
GTGAAATTAACCAATCCGCTAAAAAGACCGAGACTTGTCAAAAAACCTGTTCAAATTACCGCAAAAAAATCGTTTGATGT
TAAAGCCTTTACCGAAAGCTTTAAATCACTAGACCAAAATAATTATGGTAGCTGGCCTGTACCTGTTAAGGTGACCGTCT
TGCTATTTATGGTCGCTGTTATCGCTTTTTTAACTTGGTTTTTACCAATTAGTAGCAAACGTGAGGAGATTGCCGCTGCC
GAAGCCGAGCAGCAAACCTTGCTTGAACAATATCGCCAAAAAGAATCCAAAGCACGTCATCTAAAAGAATATCAAGCGCA
AGTATCAAAAATGCAGTCTGATTTTAAAGAACTGCTCAATCAATTACCCAAAGACACCCGTATTTCTGACCTAGTGGATG
GGATTAATATGGTTGGTGTGGGCAGTAATGTCAAATTTCAGGATATCAAAGTTGAGCCAGAAGTGTCCCAAGAGTTCTTT
ATTGAGCAGCCAATTCGTATTGCCGCTTTAGGGGATTATCACCAATTTGGGTCATTCATTAGTGGACTTGCTAAACTACC
TCGCATTATTACCCTGCATGACTTTGAGGTTACCAATCCTAGTCCTAGCCTAGACAAGCTACCAGAAACCAATCTTGTTT
TGAACGTCAAAACTTATCGTTCAAAAGAGCTAAATGAAGAAGAATTGAAAAAGGCACAACAAGATAATCAAAAAAATCCA
GCTGGGTCTGACAATAAGGAAGCAAATAATGGCGATAAATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(78-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO/pilO Acinetobacter baylyi ADP1

43.46

93.676

0.407
  pilO Acinetobacter baumannii D1279779

47.343

81.818

0.387