Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BVG12_RS23645 Genome accession   NZ_CP019038
Coordinates   4816084..4817610 (-) Length   508 a.a.
NCBI ID   WP_075794524.1    Uniprot ID   -
Organism   Massilia putida strain 6NM-7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4811084..4822610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVG12_RS23620 - 4811608..4811946 (-) 339 WP_075794519.1 DUF1840 domain-containing protein -
  BVG12_RS23625 - 4812017..4813552 (-) 1536 WP_075794520.1 hypothetical protein -
  BVG12_RS23630 - 4813549..4814289 (-) 741 WP_075794521.1 ABC transporter ATP-binding protein -
  BVG12_RS23635 - 4814291..4814803 (-) 513 WP_075794522.1 hypothetical protein -
  BVG12_RS23640 - 4815115..4816074 (+) 960 WP_075794523.1 GlxA family transcriptional regulator -
  BVG12_RS23645 comM 4816084..4817610 (-) 1527 WP_075794524.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BVG12_RS23650 - 4817764..4818057 (+) 294 WP_075794525.1 hypothetical protein -
  BVG12_RS23655 - 4818084..4818332 (-) 249 WP_075794526.1 accessory factor UbiK family protein -
  BVG12_RS23660 - 4818600..4819346 (+) 747 WP_075794527.1 TorF family putative porin -
  BVG12_RS23665 - 4819359..4819697 (+) 339 WP_025511601.1 P-II family nitrogen regulator -
  BVG12_RS23670 - 4819708..4821258 (+) 1551 WP_075794528.1 ammonium transporter -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54843.70 Da        Isoelectric Point: 7.0235

>NTDB_id=212706 BVG12_RS23645 WP_075794524.1 4816084..4817610(-) (comM) [Massilia putida strain 6NM-7]
MSLAVLRSRALAGMEAPAVSVEVHLANGLPAMNIVGLADAEVRESKDRVRAALQNSGFEVPSRRITINLAPAELPKESGR
FDLPIALGILAASEQIPAAALDGYEFAGELSLSGELRPVRGALAMSFAMLRRHTDGDAPARAFVLPWANADEAALVTDAA
IYPARSLLEVCAHFAAKADDARLQRYRPASSDDAPVYPDFADVKGQQQVKRALEVAAAGLHSVLLIGPPGAGKSMLASRF
PGLLPPMCEDEALETAALQSLAGSFAIERWRRRPFRNPHHTSSGVALVGGGQVPRPGEISLAHHGVLFLDELPEFDRKVL
EVLREPLETGAITISRAARQADFPANFQLIAAMNPCPCGWLGHPSNKCRCTPDAVQRYQDRISGPLLDRIDIQVPMTAMA
PDTMAQLADGEPSAAIAERVACAHARQLARQGKANQKLTTREIDTHCRLDDAAERLLGDAMQHLHWSARAYHRVLKVART
VADLAESETVKPAHVAEAIQYRRGLRDR

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=212706 BVG12_RS23645 WP_075794524.1 4816084..4817610(-) (comM) [Massilia putida strain 6NM-7]
TTGAGCCTCGCCGTCCTCAGGAGCCGCGCCCTCGCCGGCATGGAAGCGCCCGCCGTCAGCGTGGAAGTCCACCTGGCCAA
CGGGCTGCCGGCCATGAATATCGTGGGTCTTGCCGACGCCGAGGTGCGCGAGTCGAAGGACCGCGTACGCGCCGCGCTGC
AGAACTCGGGCTTCGAGGTCCCGAGCCGGCGCATCACGATCAACCTCGCGCCGGCCGAACTGCCCAAGGAATCGGGCCGG
TTCGACTTGCCCATCGCGCTGGGCATCCTGGCCGCGTCCGAACAGATCCCGGCCGCGGCGCTGGACGGCTATGAATTCGC
CGGCGAACTGTCGCTGTCGGGAGAACTGCGCCCCGTGCGTGGCGCGCTGGCGATGAGTTTCGCGATGCTGCGCCGGCACA
CCGATGGCGACGCGCCGGCGCGCGCCTTCGTGCTGCCCTGGGCGAACGCGGACGAAGCGGCGCTCGTGACGGACGCCGCC
ATCTATCCCGCCCGCTCGTTGCTGGAGGTGTGTGCGCACTTCGCCGCCAAGGCCGACGACGCGCGCTTGCAGCGCTACCG
GCCCGCGTCGTCCGATGATGCGCCCGTGTACCCGGACTTCGCCGACGTCAAGGGCCAGCAGCAGGTCAAGCGCGCGCTCG
AGGTGGCGGCCGCGGGCCTTCACTCCGTGCTGCTGATCGGACCGCCGGGCGCCGGCAAGAGCATGCTGGCGTCCCGCTTC
CCCGGCCTGCTGCCGCCGATGTGCGAGGACGAAGCGCTGGAGACGGCCGCGCTCCAGTCGCTGGCCGGCAGCTTCGCCAT
CGAACGTTGGCGACGGCGGCCGTTCCGCAATCCGCACCACACGAGTTCCGGCGTGGCCCTCGTCGGCGGGGGACAAGTGC
CGCGGCCCGGAGAAATTTCGCTGGCCCATCACGGCGTCCTGTTCCTGGACGAGCTCCCGGAATTCGACCGCAAGGTGCTG
GAAGTACTGCGCGAACCGCTGGAAACGGGCGCCATCACGATCTCGCGCGCTGCCCGCCAGGCCGACTTCCCCGCGAACTT
TCAATTGATCGCGGCGATGAATCCGTGCCCGTGCGGCTGGCTGGGCCATCCATCAAATAAATGCCGCTGCACGCCGGACG
CCGTCCAGCGCTACCAGGACCGCATTTCCGGCCCCCTCCTCGACCGCATCGACATCCAGGTGCCCATGACGGCGATGGCG
CCGGACACGATGGCCCAACTGGCCGACGGGGAGCCGAGCGCGGCCATCGCGGAAAGAGTCGCGTGCGCGCATGCGCGCCA
GCTGGCGCGCCAGGGCAAGGCCAATCAAAAGCTGACGACGCGCGAGATCGACACCCACTGCCGCCTCGACGACGCCGCCG
AGCGGCTGCTGGGCGACGCTATGCAGCACCTGCACTGGTCGGCGCGCGCCTACCACCGCGTGCTCAAGGTGGCGCGCACG
GTCGCCGACCTGGCGGAATCCGAGACGGTGAAGCCCGCCCACGTGGCCGAGGCGATCCAGTACCGGCGCGGCTTACGCGA
TCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-400)

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.673

99.409

0.524
  comM Vibrio cholerae strain A1552

51.683

99.409

0.514
  comM Legionella pneumophila str. Paris

50.688

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.688

100

0.508
  comM Glaesserella parasuis strain SC1401

49.012

99.606

0.488
  comM Haemophilus influenzae Rd KW20

47.647

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.38

100

0.451

Multiple sequence alignment