Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BUQ72_RS15310 Genome accession   NZ_CP018845
Coordinates   3453117..3454640 (+) Length   507 a.a.
NCBI ID   WP_079217304.1    Uniprot ID   -
Organism   Herbaspirillum robiniae strain AA6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3448117..3459640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ72_RS15290 - 3449653..3451194 (-) 1542 WP_079217301.1 ammonium transporter -
  BUQ72_RS15295 - 3451211..3451549 (-) 339 WP_006713297.1 P-II family nitrogen regulator -
  BUQ72_RS15300 - 3451562..3452359 (-) 798 WP_079217302.1 TorF family putative porin -
  BUQ72_RS15305 - 3452801..3453046 (+) 246 WP_079217303.1 accessory factor UbiK family protein -
  BUQ72_RS15310 comM 3453117..3454640 (+) 1524 WP_079217304.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BUQ72_RS15315 - 3454803..3456809 (-) 2007 WP_079217305.1 OPT family oligopeptide transporter -
  BUQ72_RS15320 - 3456984..3457505 (+) 522 WP_079217306.1 hypothetical protein -
  BUQ72_RS15325 - 3457682..3458026 (+) 345 WP_079217307.1 DUF1840 domain-containing protein -
  BUQ72_RS15330 - 3458162..3459376 (-) 1215 WP_079217308.1 MFS transporter -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54260.93 Da        Isoelectric Point: 8.6571

>NTDB_id=210962 BUQ72_RS15310 WP_079217304.1 3453117..3454640(+) (comM) [Herbaspirillum robiniae strain AA6]
MSLAVLRSRALAGMRAPPVTVEVHLANGLPSFTIVGLPEAEVKEAKDRVRAALQNARFEFPSRRITVNLAPADLPKESGR
FDLPIALGILAASDQIPGDSFDQYEFAGELSLSGELRPIRGALAMTYAMYRGGDDAQTRRGFILPAANADEAALVTNASV
LPARSLLDVCTHFATRDPQGKLARHCAKRGDSPLAWPDLSDVKGQLQAKRALEIAAAGGHSALLMGPPGTGKSMLASRLP
GILPPMSDEQALEAAAVQSLGAGFDAARWKQRPYRAPHHTASAVALVGGGSTPRPGEVSLAHHGILFLDELPEYSRHVLE
VLREPLESGCITISRAARQAEFPARFQLIAAMNPCPCGYYGDDSGRCRCSPDIIARYQGRISGPLLDRIDLQVMVGALPA
SELADAAPGEASAAVALRAAQAHERQQQRQGKSNSRLGPQEIDLHCRPEKAGEDLLRAAMARLNWSARAYHRVLKVARTI
ADLGGSASVQQAHIAEAIQYRRALRQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=210962 BUQ72_RS15310 WP_079217304.1 3453117..3454640(+) (comM) [Herbaspirillum robiniae strain AA6]
ATGAGCCTGGCCGTCCTGCGCAGCCGCGCGCTGGCCGGCATGCGCGCCCCGCCGGTCACGGTGGAAGTCCACCTGGCCAA
CGGCCTGCCCTCCTTCACCATCGTCGGCCTGCCCGAAGCCGAGGTGAAGGAAGCCAAGGACCGGGTGCGCGCCGCGCTGC
AAAACGCGCGCTTCGAATTCCCCTCCCGCCGCATTACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAGTCCGGGCGC
TTCGACCTGCCCATCGCGCTGGGCATCCTGGCCGCGTCGGACCAGATCCCGGGCGACAGCTTCGACCAATATGAATTCGC
CGGGGAGCTCTCGCTCTCCGGCGAGCTGCGCCCGATCCGCGGCGCGCTGGCGATGACTTATGCCATGTACCGCGGCGGGG
ACGATGCGCAAACCCGGCGCGGCTTCATCCTGCCCGCGGCCAACGCCGACGAAGCCGCGCTGGTGACCAACGCCAGCGTG
CTGCCGGCGCGCTCGCTGCTGGATGTATGCACCCACTTCGCCACGCGCGATCCCCAGGGCAAGCTCGCCCGCCACTGCGC
CAAACGCGGCGACTCGCCGCTCGCGTGGCCCGACTTAAGTGACGTCAAGGGCCAGCTGCAGGCCAAACGGGCACTGGAAA
TCGCCGCCGCCGGCGGCCACAGCGCCTTGCTGATGGGGCCGCCCGGCACCGGCAAGTCGATGCTGGCCTCGCGCCTGCCG
GGCATCCTGCCGCCGATGAGCGACGAGCAGGCGCTGGAAGCGGCCGCGGTGCAATCGCTGGGCGCCGGCTTCGACGCCGC
CCGCTGGAAGCAGCGCCCGTATCGCGCCCCGCACCATACGGCGTCCGCGGTGGCGCTGGTCGGCGGCGGCAGCACGCCGC
GCCCGGGCGAGGTCTCCCTGGCGCACCATGGCATCCTGTTCCTGGACGAATTGCCGGAGTACAGCCGGCACGTGCTCGAA
GTACTGCGCGAGCCGCTGGAGTCCGGCTGCATCACCATCTCGCGGGCGGCGCGGCAGGCGGAGTTTCCCGCGCGCTTCCA
GCTGATCGCCGCGATGAATCCTTGCCCCTGCGGCTACTACGGCGATGACAGCGGACGCTGCCGCTGCTCGCCCGATATCA
TCGCGCGCTACCAGGGACGCATCTCCGGCCCGCTGCTCGACCGCATCGACCTGCAGGTCATGGTGGGCGCGCTGCCGGCG
TCCGAACTGGCCGATGCCGCGCCGGGAGAAGCGTCGGCCGCAGTGGCGCTGCGCGCCGCCCAAGCCCATGAACGCCAGCA
GCAGCGCCAGGGCAAATCCAACAGCCGGCTGGGGCCGCAGGAGATCGACCTCCACTGCCGCCCGGAAAAAGCCGGGGAGG
ACCTGCTGCGTGCAGCCATGGCCAGGCTCAACTGGTCGGCGCGCGCCTATCACCGGGTATTGAAGGTGGCGCGCACCATC
GCCGACCTCGGCGGTTCGGCGTCCGTGCAGCAGGCGCATATCGCGGAGGCGATCCAGTACCGGCGCGCGTTGCGGCAGTC
CTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-401)

Subunit ChlI of Mg-chelatase (ChlI)

(21-147)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.816

100

0.542
  comM Vibrio campbellii strain DS40M4

53.425

100

0.538
  comM Haemophilus influenzae Rd KW20

51.765

100

0.521
  comM Legionella pneumophila strain ERS1305867

51.569

100

0.519
  comM Legionella pneumophila str. Paris

51.569

100

0.519
  comM Glaesserella parasuis strain SC1401

51.779

99.803

0.517
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.129

99.211

0.448

Multiple sequence alignment