Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSQ33_RS06770 Genome accession   NZ_CP018835
Coordinates   1477499..1478026 (+) Length   175 a.a.
NCBI ID   WP_088133705.1    Uniprot ID   -
Organism   Vibrio gazogenes strain ATCC 43942     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1472499..1483026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS06755 (BSQ33_06810) uvrA 1472613..1475435 (-) 2823 WP_088133704.1 excinuclease ABC subunit UvrA -
  BSQ33_RS06760 (BSQ33_06815) galU 1475574..1476461 (-) 888 WP_021019723.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BSQ33_RS06765 (BSQ33_06820) qstR 1476579..1477226 (-) 648 WP_027694103.1 response regulator transcription factor Regulator
  BSQ33_RS06770 (BSQ33_06825) ssb 1477499..1478026 (+) 528 WP_088133705.1 single-stranded DNA-binding protein Machinery gene
  BSQ33_RS06775 (BSQ33_06830) metH 1478123..1481797 (-) 3675 WP_088133706.1 methionine synthase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19339.31 Da        Isoelectric Point: 5.2252

>NTDB_id=210774 BSQ33_RS06770 WP_088133705.1 1477499..1478026(+) (ssb) [Vibrio gazogenes strain ATCC 43942]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSETWRDKTTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQERYTTEVVVQGFNGVMQMLGGRQGSGGQAQSQPGMQAQQQNSGWGQPQQPQSQAAHQQQQSAPQP
QYNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=210774 BSQ33_RS06770 WP_088133705.1 1477499..1478026(+) (ssb) [Vibrio gazogenes strain ATCC 43942]
ATGGCAAGCCGTGGAGTAAACAAAGTTATATTAGTTGGGAACCTTGGAAGTGATCCTGAAGTTCGTTACATGCCAAGTGG
CGGTGCAGTTGCGAACATCACGATTGCGACGTCGGAAACATGGCGCGATAAAACAACGGGTGAGCAAAGAGAAAAAACCG
AGTGGCACCGTGTCGCCCTGTTCGGTAAATTGGCAGAAGTCGCAGGAGAATACCTACGCAAAGGTTCTCAGGTATATATT
GAAGGGCAGTTGCAAACGCGGAAATGGCAAGATCAAAGTGGTCAGGAACGTTATACAACTGAAGTTGTTGTTCAAGGGTT
TAACGGTGTGATGCAAATGCTCGGTGGTCGCCAAGGCTCTGGTGGTCAAGCTCAGTCTCAGCCAGGGATGCAAGCTCAGC
AACAAAACAGTGGATGGGGACAGCCTCAACAGCCACAATCACAAGCAGCGCATCAGCAGCAACAATCAGCACCGCAACCA
CAATACAATGAGCCACCAATGGATTTTGATGACGATATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.556

100

0.829
  ssb Glaesserella parasuis strain SC1401

54.737

100

0.594
  ssb Neisseria gonorrhoeae MS11

46.111

100

0.474
  ssb Neisseria meningitidis MC58

45.604

100

0.474

Multiple sequence alignment