Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BSQ33_RS06765 Genome accession   NZ_CP018835
Coordinates   1476579..1477226 (-) Length   215 a.a.
NCBI ID   WP_027694103.1    Uniprot ID   A0A1Z2SIX3
Organism   Vibrio gazogenes strain ATCC 43942     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1471579..1482226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS06755 (BSQ33_06810) uvrA 1472613..1475435 (-) 2823 WP_088133704.1 excinuclease ABC subunit UvrA -
  BSQ33_RS06760 (BSQ33_06815) galU 1475574..1476461 (-) 888 WP_021019723.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BSQ33_RS06765 (BSQ33_06820) qstR 1476579..1477226 (-) 648 WP_027694103.1 response regulator transcription factor Regulator
  BSQ33_RS06770 (BSQ33_06825) ssb 1477499..1478026 (+) 528 WP_088133705.1 single-stranded DNA-binding protein Machinery gene
  BSQ33_RS06775 (BSQ33_06830) metH 1478123..1481797 (-) 3675 WP_088133706.1 methionine synthase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25159.09 Da        Isoelectric Point: 9.7486

>NTDB_id=210773 BSQ33_RS06765 WP_027694103.1 1476579..1477226(-) (qstR) [Vibrio gazogenes strain ATCC 43942]
MKRSNYSRVLYVLYPDNQEPSTFYHEIEGALGQRLPKIQPRQFLLSHQTDRHKILLFDYQQKEVLLSRLNMDNALDLCLE
TVVINVEKRPRTEELLQLGNLKGLFYRSDPIELIIAALREIREGQIYLPRHICGQLLHYYRHLFNNKNVTAAISLTSREL
EILRCLKTGASNTQIADNLFISEFTVKSHLYQIFKKISVKNRTQATTWAKQNLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=210773 BSQ33_RS06765 WP_027694103.1 1476579..1477226(-) (qstR) [Vibrio gazogenes strain ATCC 43942]
ATGAAAAGATCAAATTACAGCAGAGTGCTCTATGTCCTCTATCCCGATAATCAAGAACCCTCAACGTTCTATCATGAAAT
CGAGGGCGCACTCGGACAGAGACTCCCCAAAATCCAACCTCGGCAGTTTCTGCTGTCCCATCAGACCGATCGGCATAAAA
TTCTCCTGTTTGATTATCAACAAAAAGAAGTATTGCTATCTCGCTTGAATATGGATAATGCACTGGATTTGTGCCTCGAA
ACCGTAGTTATCAATGTTGAGAAACGCCCGAGAACAGAGGAACTTCTTCAACTCGGTAATTTGAAAGGGTTGTTTTATCG
TAGTGATCCGATTGAACTGATCATTGCTGCTTTGCGTGAAATCCGAGAAGGGCAAATTTATTTACCACGACATATTTGTG
GTCAGCTTCTTCATTACTATCGCCATTTATTTAACAATAAAAATGTTACTGCGGCGATCTCGCTGACGTCCAGAGAGTTG
GAAATCCTGCGCTGTCTGAAAACGGGGGCATCGAACACTCAAATTGCAGATAATCTGTTTATCAGTGAATTCACGGTCAA
ATCACATCTGTATCAGATCTTTAAGAAAATCTCGGTGAAAAACCGCACTCAAGCCACAACATGGGCAAAACAAAATCTAG
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z2SIX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

50.23

100

0.507
  qstR Vibrio campbellii strain DS40M4

46.296

100

0.465
  qstR Vibrio parahaemolyticus RIMD 2210633

44.651

100

0.447

Multiple sequence alignment