Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPYLPMSS1_RS00230 | Genome accession | NZ_CP018823 |
| Coordinates | 39102..40232 (+) | Length | 376 a.a. |
| NCBI ID | WP_077231620.1 | Uniprot ID | - |
| Organism | Helicobacter pylori PMSS1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34102..45232
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPYLPMSS1_RS00195 (HPYLPMSS1_00035) | panD | 34544..34897 (+) | 354 | WP_000142235.1 | aspartate 1-decarboxylase | - |
| HPYLPMSS1_RS00200 (HPYLPMSS1_00036) | - | 34900..35202 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPYLPMSS1_RS00205 (HPYLPMSS1_00037) | - | 35202..36197 (+) | 996 | WP_077231617.1 | PDZ domain-containing protein | - |
| HPYLPMSS1_RS00210 (HPYLPMSS1_00038) | comB6 | 36205..37260 (+) | 1056 | WP_077231618.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPYLPMSS1_RS00215 (HPYLPMSS1_00039) | comB7 | 37276..37389 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPYLPMSS1_RS00220 (HPYLPMSS1_00040) | comB8 | 37386..38129 (+) | 744 | WP_001208396.1 | type IV secretion system protein | Machinery gene |
| HPYLPMSS1_RS00225 (HPYLPMSS1_00041) | comB9 | 38129..39109 (+) | 981 | WP_077231619.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPYLPMSS1_RS00230 (HPYLPMSS1_00042) | comB10 | 39102..40232 (+) | 1131 | WP_077231620.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPYLPMSS1_RS00235 (HPYLPMSS1_00043) | - | 40303..41715 (+) | 1413 | WP_077231621.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPYLPMSS1_RS00240 (HPYLPMSS1_00044) | gmd | 41756..42901 (+) | 1146 | WP_077231622.1 | GDP-mannose 4,6-dehydratase | - |
| HPYLPMSS1_RS00245 (HPYLPMSS1_00045) | - | 42894..43826 (+) | 933 | WP_077231623.1 | GDP-L-fucose synthase family protein | - |
| HPYLPMSS1_RS00250 (HPYLPMSS1_00046) | - | 44175..44591 (-) | 417 | WP_077232616.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41973.52 Da Isoelectric Point: 9.8333
>NTDB_id=210674 HPYLPMSS1_RS00230 WP_077231620.1 39102..40232(+) (comB10) [Helicobacter pylori PMSS1]
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKNPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKNPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=210674 HPYLPMSS1_RS00230 WP_077231620.1 39102..40232(+) (comB10) [Helicobacter pylori PMSS1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAACCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AGAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAACCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AGAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
98.138 |
100 |
0.981 |