Detailed information NTG0210673

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPYLPMSS1_RS00225
• Genome accession: NZ_CP018823
• Coordinates: 38129..39109 (+)
• Length: 326 a.a.
• NCBI ID: WP_077231619.1
• Uniprot ID: -
• Organism: Helicobacter pylori PMSS1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33129..44109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPYLPMSS1_RS00195 (HPYLPMSS1_00035)	panD	34544..34897 (+)	354	WP_000142235.1	aspartate 1-decarboxylase	-
HPYLPMSS1_RS00200 (HPYLPMSS1_00036)	-	34900..35202 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HPYLPMSS1_RS00205 (HPYLPMSS1_00037)	-	35202..36197 (+)	996	WP_077231617.1	PDZ domain-containing protein	-
HPYLPMSS1_RS00210 (HPYLPMSS1_00038)	comB6	36205..37260 (+)	1056	WP_077231618.1	P-type conjugative transfer protein TrbL	Machinery gene
HPYLPMSS1_RS00215 (HPYLPMSS1_00039)	comB7	37276..37389 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPYLPMSS1_RS00220 (HPYLPMSS1_00040)	comB8	37386..38129 (+)	744	WP_001208396.1	type IV secretion system protein	Machinery gene
HPYLPMSS1_RS00225 (HPYLPMSS1_00041)	comB9	38129..39109 (+)	981	WP_077231619.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPYLPMSS1_RS00230 (HPYLPMSS1_00042)	comB10	39102..40232 (+)	1131	WP_077231620.1	DNA type IV secretion system protein ComB10	Machinery gene
HPYLPMSS1_RS00235 (HPYLPMSS1_00043)	-	40303..41715 (+)	1413	WP_077231621.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPYLPMSS1_RS00240 (HPYLPMSS1_00044)	gmd	41756..42901 (+)	1146	WP_077231622.1	GDP-mannose 4,6-dehydratase	-
HPYLPMSS1_RS00245 (HPYLPMSS1_00045)	-	42894..43826 (+)	933	WP_077231623.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37556.23 Da
• Isoelectric Point: 9.3371

>NTDB_id=210673 HPYLPMSS1_RS00225 WP_077231619.1 38129..39109(+) (comB9) [Helicobacter pylori PMSS1]
MRKFLYALMGFLLTFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENMAENAPKDAPINNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGI
CSKKSKPSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFV
KKAKDE

Nucleotide

• Length: 981 bp

>NTDB_id=210673 HPYLPMSS1_RS00225 WP_077231619.1 38129..39109(+) (comB9) [Helicobacter pylori PMSS1]
ATGCGGAAATTTTTATATGCTCTCATGGGCTTTTTGTTGACTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
CAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAGTGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAT
TATTACTCTAACGCTTTTTTGAAGCCCCAAAATAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCATAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGA
TGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATT
TGTTCTAAAAAATCCAAACCCTCTTTGATGCCTGAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAA
AAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGG
GCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTTGTC
AAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.785	100	0.948