Detailed information NTG0210670

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPYLPMSS1_RS00210
• Genome accession: NZ_CP018823
• Coordinates: 36205..37260 (+)
• Length: 351 a.a.
• NCBI ID: WP_077231618.1
• Uniprot ID: -
• Organism: Helicobacter pylori PMSS1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31205..42260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPYLPMSS1_RS00180 (HPYLPMSS1_00032)	-	31626..32039 (+)	414	WP_001023005.1	universal stress protein	-
HPYLPMSS1_RS00185 (HPYLPMSS1_00033)	-	32054..32329 (+)	276	WP_077231615.1	ATP-dependent Clp protease adaptor ClpS	-
HPYLPMSS1_RS00190 (HPYLPMSS1_00034)	-	32329..34554 (+)	2226	WP_077231616.1	AAA family ATPase	-
HPYLPMSS1_RS00195 (HPYLPMSS1_00035)	panD	34544..34897 (+)	354	WP_000142235.1	aspartate 1-decarboxylase	-
HPYLPMSS1_RS00200 (HPYLPMSS1_00036)	-	34900..35202 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HPYLPMSS1_RS00205 (HPYLPMSS1_00037)	-	35202..36197 (+)	996	WP_077231617.1	PDZ domain-containing protein	-
HPYLPMSS1_RS00210 (HPYLPMSS1_00038)	comB6	36205..37260 (+)	1056	WP_077231618.1	P-type conjugative transfer protein TrbL	Machinery gene
HPYLPMSS1_RS00215 (HPYLPMSS1_00039)	comB7	37276..37389 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPYLPMSS1_RS00220 (HPYLPMSS1_00040)	comB8	37386..38129 (+)	744	WP_001208396.1	type IV secretion system protein	Machinery gene
HPYLPMSS1_RS00225 (HPYLPMSS1_00041)	comB9	38129..39109 (+)	981	WP_077231619.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPYLPMSS1_RS00230 (HPYLPMSS1_00042)	comB10	39102..40232 (+)	1131	WP_077231620.1	DNA type IV secretion system protein ComB10	Machinery gene
HPYLPMSS1_RS00235 (HPYLPMSS1_00043)	-	40303..41715 (+)	1413	WP_077231621.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39671.65 Da
• Isoelectric Point: 9.0419

>NTDB_id=210670 HPYLPMSS1_RS00210 WP_077231618.1 36205..37260(+) (comB6) [Helicobacter pylori PMSS1]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLLLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVMCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=210670 HPYLPMSS1_RS00210 WP_077231618.1 36205..37260(+) (comB6) [Helicobacter pylori PMSS1]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTCTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963