Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPYLPMSS1_RS00215 | Genome accession | NZ_CP018823 |
| Coordinates | 37276..37389 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori PMSS1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32276..42389
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPYLPMSS1_RS00190 (HPYLPMSS1_00034) | - | 32329..34554 (+) | 2226 | WP_077231616.1 | AAA family ATPase | - |
| HPYLPMSS1_RS00195 (HPYLPMSS1_00035) | panD | 34544..34897 (+) | 354 | WP_000142235.1 | aspartate 1-decarboxylase | - |
| HPYLPMSS1_RS00200 (HPYLPMSS1_00036) | - | 34900..35202 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPYLPMSS1_RS00205 (HPYLPMSS1_00037) | - | 35202..36197 (+) | 996 | WP_077231617.1 | PDZ domain-containing protein | - |
| HPYLPMSS1_RS00210 (HPYLPMSS1_00038) | comB6 | 36205..37260 (+) | 1056 | WP_077231618.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPYLPMSS1_RS00215 (HPYLPMSS1_00039) | comB7 | 37276..37389 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPYLPMSS1_RS00220 (HPYLPMSS1_00040) | comB8 | 37386..38129 (+) | 744 | WP_001208396.1 | type IV secretion system protein | Machinery gene |
| HPYLPMSS1_RS00225 (HPYLPMSS1_00041) | comB9 | 38129..39109 (+) | 981 | WP_077231619.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPYLPMSS1_RS00230 (HPYLPMSS1_00042) | comB10 | 39102..40232 (+) | 1131 | WP_077231620.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPYLPMSS1_RS00235 (HPYLPMSS1_00043) | - | 40303..41715 (+) | 1413 | WP_077231621.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=210671 HPYLPMSS1_RS00215 WP_001217873.1 37276..37389(+) (comB7) [Helicobacter pylori PMSS1]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=210671 HPYLPMSS1_RS00215 WP_001217873.1 37276..37389(+) (comB7) [Helicobacter pylori PMSS1]
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |