Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPYLPMSS1_RS00220 Genome accession   NZ_CP018823
Coordinates   37386..38129 (+) Length   247 a.a.
NCBI ID   WP_001208396.1    Uniprot ID   -
Organism   Helicobacter pylori PMSS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32386..43129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLPMSS1_RS00195 (HPYLPMSS1_00035) panD 34544..34897 (+) 354 WP_000142235.1 aspartate 1-decarboxylase -
  HPYLPMSS1_RS00200 (HPYLPMSS1_00036) - 34900..35202 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HPYLPMSS1_RS00205 (HPYLPMSS1_00037) - 35202..36197 (+) 996 WP_077231617.1 PDZ domain-containing protein -
  HPYLPMSS1_RS00210 (HPYLPMSS1_00038) comB6 36205..37260 (+) 1056 WP_077231618.1 P-type conjugative transfer protein TrbL Machinery gene
  HPYLPMSS1_RS00215 (HPYLPMSS1_00039) comB7 37276..37389 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPYLPMSS1_RS00220 (HPYLPMSS1_00040) comB8 37386..38129 (+) 744 WP_001208396.1 type IV secretion system protein Machinery gene
  HPYLPMSS1_RS00225 (HPYLPMSS1_00041) comB9 38129..39109 (+) 981 WP_077231619.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPYLPMSS1_RS00230 (HPYLPMSS1_00042) comB10 39102..40232 (+) 1131 WP_077231620.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPYLPMSS1_RS00235 (HPYLPMSS1_00043) - 40303..41715 (+) 1413 WP_077231621.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPYLPMSS1_RS00240 (HPYLPMSS1_00044) gmd 41756..42901 (+) 1146 WP_077231622.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28780.00 Da        Isoelectric Point: 8.9604

>NTDB_id=210672 HPYLPMSS1_RS00220 WP_001208396.1 37386..38129(+) (comB8) [Helicobacter pylori PMSS1]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=210672 HPYLPMSS1_RS00220 WP_001208396.1 37386..38129(+) (comB8) [Helicobacter pylori PMSS1]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCACTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAGGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATCTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCTGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98

Multiple sequence alignment