Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | BSZ04_RS18850 | Genome accession | NZ_CP018312 |
| Coordinates | 2109756..2110043 (-) | Length | 95 a.a. |
| NCBI ID | WP_029560945.1 | Uniprot ID | - |
| Organism | Vibrio rotiferianus strain B64D1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2104756..2115043
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSZ04_RS18825 (BSZ04_18590) | - | 2105235..2106449 (+) | 1215 | WP_010447021.1 | pyridoxal phosphate-dependent aminotransferase | - |
| BSZ04_RS18830 (BSZ04_18595) | yfbR | 2106564..2107148 (+) | 585 | WP_010447019.1 | 5'-deoxynucleotidase | - |
| BSZ04_RS18835 (BSZ04_18600) | - | 2107152..2108486 (+) | 1335 | WP_050569018.1 | anti-phage deoxyguanosine triphosphatase | - |
| BSZ04_RS18840 (BSZ04_18605) | - | 2108499..2109116 (-) | 618 | WP_010447014.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| BSZ04_RS18845 (BSZ04_18610) | rrtA | 2109120..2109671 (+) | 552 | WP_162531074.1 | rhombosortase | - |
| BSZ04_RS18850 (BSZ04_18615) | comEA | 2109756..2110043 (-) | 288 | WP_029560945.1 | ComEA family DNA-binding protein | Machinery gene |
| BSZ04_RS18855 (BSZ04_18620) | ppiD | 2110187..2112046 (-) | 1860 | WP_045392827.1 | peptidylprolyl isomerase | - |
| BSZ04_RS18860 (BSZ04_18625) | - | 2112258..2112530 (-) | 273 | WP_010447007.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 10140.73 Da Isoelectric Point: 7.1654
>NTDB_id=208004 BSZ04_RS18850 WP_029560945.1 2109756..2110043(-) (comEA) [Vibrio rotiferianus strain B64D1]
MKWILSVLLCVLAPVSHGVAAESNSKHEGIEITVNVNTASAEELATLLKGIGLKKANDIVEYRQENGPFKTAADLSNVKG
IGSATVEKNLQRILL
MKWILSVLLCVLAPVSHGVAAESNSKHEGIEITVNVNTASAEELATLLKGIGLKKANDIVEYRQENGPFKTAADLSNVKG
IGSATVEKNLQRILL
Nucleotide
Download Length: 288 bp
>NTDB_id=208004 BSZ04_RS18850 WP_029560945.1 2109756..2110043(-) (comEA) [Vibrio rotiferianus strain B64D1]
ATGAAGTGGATTCTATCAGTACTGTTATGCGTGCTTGCACCAGTTAGCCATGGAGTCGCAGCTGAGAGCAACAGTAAACA
TGAAGGTATTGAAATTACGGTTAATGTAAATACAGCTTCGGCAGAGGAGTTAGCGACGCTGCTGAAAGGTATCGGGTTAA
AGAAAGCGAATGATATCGTTGAGTATCGCCAAGAGAACGGCCCATTTAAAACTGCGGCTGATTTGTCGAATGTTAAAGGT
ATAGGGTCAGCTACGGTTGAAAAGAATCTTCAGCGTATCTTGTTATAA
ATGAAGTGGATTCTATCAGTACTGTTATGCGTGCTTGCACCAGTTAGCCATGGAGTCGCAGCTGAGAGCAACAGTAAACA
TGAAGGTATTGAAATTACGGTTAATGTAAATACAGCTTCGGCAGAGGAGTTAGCGACGCTGCTGAAAGGTATCGGGTTAA
AGAAAGCGAATGATATCGTTGAGTATCGCCAAGAGAACGGCCCATTTAAAACTGCGGCTGATTTGTCGAATGTTAAAGGT
ATAGGGTCAGCTACGGTTGAAAAGAATCTTCAGCGTATCTTGTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
68.75 |
100 |
0.695 |
| comEA | Vibrio campbellii strain DS40M4 |
66.316 |
100 |
0.663 |
| comEA | Vibrio cholerae C6706 |
73.913 |
72.632 |
0.537 |
| comEA | Vibrio cholerae strain A1552 |
73.913 |
72.632 |
0.537 |
| comE | Neisseria gonorrhoeae MS11 |
42.857 |
88.421 |
0.379 |
| comE | Neisseria gonorrhoeae MS11 |
42.857 |
88.421 |
0.379 |
| comE | Neisseria gonorrhoeae MS11 |
42.857 |
88.421 |
0.379 |
| comE | Neisseria gonorrhoeae MS11 |
42.857 |
88.421 |
0.379 |