Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BSZ05_RS08960 | Genome accession | NZ_CP018308 |
| Coordinates | 1884489..1885040 (+) | Length | 183 a.a. |
| NCBI ID | WP_006070982.1 | Uniprot ID | A0A084T6G5 |
| Organism | Vibrio mediterranei strain QT6D1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1879489..1890040
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSZ05_RS08945 (BSZ05_08905) | uvrA | 1879540..1882368 (-) | 2829 | WP_038229114.1 | excinuclease ABC subunit UvrA | - |
| BSZ05_RS08950 (BSZ05_08910) | galU | 1882532..1883401 (-) | 870 | WP_006070978.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| BSZ05_RS08955 (BSZ05_08915) | qstR | 1883578..1884228 (-) | 651 | WP_006070980.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| BSZ05_RS08960 (BSZ05_08920) | ssb | 1884489..1885040 (+) | 552 | WP_006070982.1 | single-stranded DNA-binding protein | Machinery gene |
| BSZ05_RS08965 (BSZ05_08925) | csrD | 1885303..1887294 (+) | 1992 | WP_088876668.1 | RNase E specificity factor CsrD | - |
| BSZ05_RS08970 (BSZ05_08930) | - | 1887307..1888815 (+) | 1509 | WP_088876669.1 | MSHA biogenesis protein MshI | - |
| BSZ05_RS08975 (BSZ05_08935) | gspM | 1888812..1889462 (+) | 651 | WP_088876670.1 | type II secretion system protein GspM | - |
| BSZ05_RS08980 (BSZ05_08940) | - | 1889455..1889781 (+) | 327 | WP_088876671.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 20119.39 Da Isoelectric Point: 5.2358
>NTDB_id=207958 BSZ05_RS08960 WP_006070982.1 1884489..1885040(+) (ssb) [Vibrio mediterranei strain QT6D1]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMQGGMQGGMNQGGGMQQQAPQQQGWGQPQQPVQQPAQ
QKPAQQQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMQGGMQGGMNQGGGMQQQAPQQQGWGQPQQPVQQPAQ
QKPAQQQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 552 bp
>NTDB_id=207958 BSZ05_RS08960 WP_006070982.1 1884489..1885040(+) (ssb) [Vibrio mediterranei strain QT6D1]
ATGGCAAGCCGTGGAGTAAACAAAGTCATTCTAGTGGGTAACTTAGGTAACGACCCAGAAATTCGTTACATGCCAAACGG
CGGTGCCGTGGCGAATATTACAATCGCAACCTCTGAATCTTGGCGTGATAAAGCGACAGGCGAGCAGCGTGAAAAAACTG
AGTGGCACCGCGTTGCTCTGTTTGGCAAGCTAGCGGAAGTTGCTGGTGAATATCTGCGTAAGGGCTCTCAAGTTTATATT
GAAGGTCAGCTGCAAACTCGTAAGTGGCAAGACCAAAGTGGTCAAGACCGCTACACAACGGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTAGGTGGCCGCCAAGGTGGTGGTGCTCCTATGCAGGGTGGTATGCAAGGCGGCATGAACC
AAGGTGGTGGCATGCAGCAGCAAGCTCCTCAACAACAGGGTTGGGGACAGCCTCAACAACCTGTACAACAACCAGCTCAG
CAAAAACCTGCTCAACAGCAGCCGCAGTACAATGAGCCACCAATGGACTTCGATGACGATATCCCGTTCTAA
ATGGCAAGCCGTGGAGTAAACAAAGTCATTCTAGTGGGTAACTTAGGTAACGACCCAGAAATTCGTTACATGCCAAACGG
CGGTGCCGTGGCGAATATTACAATCGCAACCTCTGAATCTTGGCGTGATAAAGCGACAGGCGAGCAGCGTGAAAAAACTG
AGTGGCACCGCGTTGCTCTGTTTGGCAAGCTAGCGGAAGTTGCTGGTGAATATCTGCGTAAGGGCTCTCAAGTTTATATT
GAAGGTCAGCTGCAAACTCGTAAGTGGCAAGACCAAAGTGGTCAAGACCGCTACACAACGGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTAGGTGGCCGCCAAGGTGGTGGTGCTCCTATGCAGGGTGGTATGCAAGGCGGCATGAACC
AAGGTGGTGGCATGCAGCAGCAAGCTCCTCAACAACAGGGTTGGGGACAGCCTCAACAACCTGTACAACAACCAGCTCAG
CAAAAACCTGCTCAACAGCAGCCGCAGTACAATGAGCCACCAATGGACTTCGATGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
78.307 |
100 |
0.809 |
| ssb | Glaesserella parasuis strain SC1401 |
58.73 |
100 |
0.607 |
| ssb | Neisseria meningitidis MC58 |
42.857 |
100 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
42.857 |
100 |
0.459 |