Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | BSZ05_RS08955 | Genome accession | NZ_CP018308 |
| Coordinates | 1883578..1884228 (-) | Length | 216 a.a. |
| NCBI ID | WP_006070980.1 | Uniprot ID | A0AAN1FGH1 |
| Organism | Vibrio mediterranei strain QT6D1 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1878578..1889228
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSZ05_RS08945 (BSZ05_08905) | uvrA | 1879540..1882368 (-) | 2829 | WP_038229114.1 | excinuclease ABC subunit UvrA | - |
| BSZ05_RS08950 (BSZ05_08910) | galU | 1882532..1883401 (-) | 870 | WP_006070978.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| BSZ05_RS08955 (BSZ05_08915) | qstR | 1883578..1884228 (-) | 651 | WP_006070980.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| BSZ05_RS08960 (BSZ05_08920) | ssb | 1884489..1885040 (+) | 552 | WP_006070982.1 | single-stranded DNA-binding protein | Machinery gene |
| BSZ05_RS08965 (BSZ05_08925) | csrD | 1885303..1887294 (+) | 1992 | WP_088876668.1 | RNase E specificity factor CsrD | - |
| BSZ05_RS08970 (BSZ05_08930) | - | 1887307..1888815 (+) | 1509 | WP_088876669.1 | MSHA biogenesis protein MshI | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 24778.38 Da Isoelectric Point: 9.6085
>NTDB_id=207957 BSZ05_RS08955 WP_006070980.1 1883578..1884228(-) (qstR) [Vibrio mediterranei strain QT6D1]
MRRNNYQRVIQHVTLNQEDSVTKRVKRLSHLSINAIEAITPQDLLSTTSGSRNRILLFDYEESLDLFQQVLNLPLASKNF
ETVLINVPHRLTTEEILRYGHIKGLFYSHEDAKKIVIGLGEIINGKNWLPREVTSQLLHHYRHVVSANTSPTVVDLTARE
IEILRCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAWANQNLLS
MRRNNYQRVIQHVTLNQEDSVTKRVKRLSHLSINAIEAITPQDLLSTTSGSRNRILLFDYEESLDLFQQVLNLPLASKNF
ETVLINVPHRLTTEEILRYGHIKGLFYSHEDAKKIVIGLGEIINGKNWLPREVTSQLLHHYRHVVSANTSPTVVDLTARE
IEILRCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAWANQNLLS
Nucleotide
Download Length: 651 bp
>NTDB_id=207957 BSZ05_RS08955 WP_006070980.1 1883578..1884228(-) (qstR) [Vibrio mediterranei strain QT6D1]
ATGAGAAGAAATAATTACCAACGCGTCATTCAACATGTCACTCTTAATCAAGAGGACTCAGTTACCAAAAGGGTAAAGCG
CTTATCCCATCTAAGTATTAATGCTATTGAAGCGATCACTCCTCAAGATCTACTTTCAACCACCTCCGGTTCTCGTAATC
GTATTTTGCTCTTTGATTACGAAGAATCCTTAGATCTTTTCCAACAAGTGTTAAACCTGCCTTTAGCAAGCAAAAATTTT
GAGACCGTACTGATCAATGTTCCGCATCGGCTAACAACCGAGGAGATCCTTAGATATGGTCATATCAAAGGGCTCTTTTA
CAGCCACGAAGATGCTAAGAAAATCGTGATTGGTTTAGGAGAGATCATTAACGGCAAAAACTGGCTACCTCGAGAGGTAA
CCAGTCAACTGTTACATCACTATCGCCATGTGGTTTCAGCAAATACCTCTCCCACTGTGGTAGATTTGACGGCCAGAGAA
ATCGAGATCCTGCGGTGCCTGCAATCGGGAGCCAGCAACTTACAAATATCTGAAGACCTATTTATTACTGAGTCCACAGT
AAAATCTCATCTTTATCAGGTCTTTAGAAAGCTTTCTGTAAAAAACCGCCTACAAGCGATAGCTTGGGCCAATCAAAACC
TTCTCTCCTAG
ATGAGAAGAAATAATTACCAACGCGTCATTCAACATGTCACTCTTAATCAAGAGGACTCAGTTACCAAAAGGGTAAAGCG
CTTATCCCATCTAAGTATTAATGCTATTGAAGCGATCACTCCTCAAGATCTACTTTCAACCACCTCCGGTTCTCGTAATC
GTATTTTGCTCTTTGATTACGAAGAATCCTTAGATCTTTTCCAACAAGTGTTAAACCTGCCTTTAGCAAGCAAAAATTTT
GAGACCGTACTGATCAATGTTCCGCATCGGCTAACAACCGAGGAGATCCTTAGATATGGTCATATCAAAGGGCTCTTTTA
CAGCCACGAAGATGCTAAGAAAATCGTGATTGGTTTAGGAGAGATCATTAACGGCAAAAACTGGCTACCTCGAGAGGTAA
CCAGTCAACTGTTACATCACTATCGCCATGTGGTTTCAGCAAATACCTCTCCCACTGTGGTAGATTTGACGGCCAGAGAA
ATCGAGATCCTGCGGTGCCTGCAATCGGGAGCCAGCAACTTACAAATATCTGAAGACCTATTTATTACTGAGTCCACAGT
AAAATCTCATCTTTATCAGGTCTTTAGAAAGCTTTCTGTAAAAAACCGCCTACAAGCGATAGCTTGGGCCAATCAAAACC
TTCTCTCCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
52.752 |
100 |
0.532 |
| qstR | Vibrio campbellii strain DS40M4 |
52.778 |
100 |
0.528 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
52.315 |
100 |
0.523 |