Detailed information NTG0206812

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: BSR14_RS09540
• Genome accession: NZ_CP018186
• Coordinates: 2053359..2053787 (-)
• Length: 142 a.a.
• NCBI ID: WP_269434102.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain ICDC1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2048359..2058787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSR14_RS09500 (BSR14_09605)	-	2048487..2048933 (-)	447	WP_045001368.1	hypothetical protein	-
BSR14_RS09505 (BSR14_09610)	-	2049011..2049667 (-)	657	WP_014632546.1	CPBP family intramembrane glutamic endopeptidase	-
BSR14_RS09510 (BSR14_09615)	-	2049679..2049876 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
BSR14_RS09515 (BSR14_09620)	-	2050127..2051320 (-)	1194	WP_002885831.1	acetate kinase	-
BSR14_RS09520 (BSR14_09625)	comYH	2051377..2052333 (-)	957	WP_014632544.1	class I SAM-dependent methyltransferase	Machinery gene
BSR14_RS09525 (BSR14_09630)	comGG	2052378..2052695 (-)	318	WP_045001363.1	competence type IV pilus minor pilin ComGG	-
BSR14_RS09530 (BSR14_09635)	comYF	2052673..2053110 (-)	438	WP_014632542.1	competence type IV pilus minor pilin ComGF	Machinery gene
BSR14_RS09535 (BSR14_09640)	comGE	2053097..2053327 (-)	231	WP_013991265.1	competence type IV pilus minor pilin ComGE	-
BSR14_RS09540 (BSR14_09645)	comYD	2053359..2053787 (-)	429	WP_269434102.1	competence type IV pilus minor pilin ComGD	Machinery gene
BSR14_RS09545 (BSR14_09650)	comYC	2053747..2054061 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
BSR14_RS09550 (BSR14_09655)	comYB	2054070..2055170 (-)	1101	WP_156209968.1	competence type IV pilus assembly protein ComGB	Machinery gene
BSR14_RS09555 (BSR14_09660)	comYA	2055052..2055993 (-)	942	WP_045771803.1	competence type IV pilus ATPase ComGA	Machinery gene
BSR14_RS09560 (BSR14_09665)	-	2056073..2056435 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15757.21 Da
• Isoelectric Point: 10.3019

>NTDB_id=206812 BSR14_RS09540 WP_269434102.1 2053359..2053787(-) (comYD) [Streptococcus salivarius strain ICDC1]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAVAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=206812 BSR14_RS09540 WP_269434102.1 2053359..2053787(-) (comYD) [Streptococcus salivarius strain ICDC1]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTAAGTTTGTCAGGCTCAGTCACTGGTATTTTTCAACAGGTTGAAACGAACCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGTGGCGGAAGGGTCCAATGTGGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAATATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	55.725	92.254	0.514
comYD	Streptococcus mutans UA159	55.725	92.254	0.514
comYD	Streptococcus gordonii str. Challis substr. CH1	43.571	98.592	0.43
comGD/cglD	Streptococcus pneumoniae Rx1	46.457	89.437	0.415
comGD/cglD	Streptococcus pneumoniae D39	46.457	89.437	0.415
comGD/cglD	Streptococcus pneumoniae R6	46.457	89.437	0.415
comGD/cglD	Streptococcus mitis NCTC 12261	46.457	89.437	0.415
comGD/cglD	Streptococcus pneumoniae TIGR4	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	45.669	89.437	0.408
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38