Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BP422_RS25655 Genome accession   NZ_CP018145
Coordinates   5442585..5443064 (-) Length   159 a.a.
NCBI ID   WP_016739386.1    Uniprot ID   A0A2Z4MR90
Organism   Brevibacillus formosus strain NF2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5437585..5448064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BP422_RS25635 (BP422_25005) rplI 5438892..5439335 (-) 444 WP_088910104.1 50S ribosomal protein L9 -
  BP422_RS25640 (BP422_25010) - 5439362..5441299 (-) 1938 WP_088910105.1 DHH family phosphoesterase -
  BP422_RS25645 (BP422_25015) - 5441304..5442212 (-) 909 WP_088910106.1 DUF2232 domain-containing protein -
  BP422_RS25650 (BP422_25020) rpsR 5442314..5442544 (-) 231 WP_016739387.1 30S ribosomal protein S18 -
  BP422_RS25655 (BP422_25025) ssbA 5442585..5443064 (-) 480 WP_016739386.1 single-stranded DNA-binding protein Machinery gene
  BP422_RS25660 (BP422_25030) rpsF 5443094..5443381 (-) 288 WP_007720183.1 30S ribosomal protein S6 -
  BP422_RS25665 (BP422_25035) ychF 5443525..5444625 (-) 1101 WP_015894083.1 redox-regulated ATPase YchF -
  BP422_RS25670 (BP422_25040) - 5444838..5445461 (+) 624 WP_088910107.1 NAD(P)-dependent oxidoreductase -
  BP422_RS25675 (BP422_25045) pepF 5445528..5447438 (-) 1911 WP_088910108.1 oligoendopeptidase F -
  BP422_RS25680 - 5447796..5447882 (+) 87 WP_017246824.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17230.12 Da        Isoelectric Point: 5.2753

>NTDB_id=206384 BP422_RS25655 WP_016739386.1 5442585..5443064(-) (ssbA) [Brevibacillus formosus strain NF2]
MNKVILIGNLTKDPELRYTPNGVAVATFTVAVNRPRTNQAGERETDFINIVAWQKLADLCASYLRKGRQAAIEGRMQTRS
YDNKEGKKVYVTEVVAENVQFLGGRGNESGGDNSGYDPGPGMGGGNKPSGQRNNDYDPFGDPFASAGKPINISDDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=206384 BP422_RS25655 WP_016739386.1 5442585..5443064(-) (ssbA) [Brevibacillus formosus strain NF2]
ATGAATAAAGTCATTCTCATCGGCAACCTGACGAAAGATCCTGAACTTCGCTACACGCCAAATGGCGTTGCCGTTGCTAC
TTTTACTGTGGCCGTCAATCGTCCCCGCACCAATCAAGCGGGAGAGAGAGAAACGGACTTCATTAACATTGTCGCTTGGC
AAAAACTTGCCGACCTGTGCGCAAGCTATTTGCGTAAAGGTAGACAAGCAGCCATCGAAGGACGTATGCAAACACGTTCC
TATGATAATAAAGAAGGTAAAAAGGTATACGTGACGGAAGTCGTTGCGGAGAACGTTCAATTTTTGGGCGGTCGAGGCAA
TGAATCTGGCGGAGACAATTCAGGATACGATCCAGGACCAGGCATGGGTGGCGGTAACAAACCATCCGGTCAACGAAATA
ATGACTATGATCCGTTTGGTGATCCTTTCGCGAGTGCAGGCAAGCCGATCAACATTTCAGATGATGACTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4MR90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.488

100

0.579
  ssb Latilactobacillus sakei subsp. sakei 23K

43.787

100

0.465
  ssb Vibrio cholerae strain A1552

36.757

100

0.428
  ssb Neisseria gonorrhoeae MS11

37.143

100

0.409
  ssb Neisseria meningitidis MC58

36.571

100

0.403
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.384

Multiple sequence alignment