Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BSG21_RS05455 Genome accession   NZ_CP018109
Coordinates   1074842..1075471 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MRSN346595     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069842..1080471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG21_RS05430 (BSG21_05075) ycbZ 1070243..1072003 (-) 1761 WP_000152888.1 Lon protease family protein -
  BSG21_RS05435 (BSG21_05080) matP 1072189..1072641 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  BSG21_RS05440 (BSG21_05085) ompA 1072717..1073757 (-) 1041 WP_000750416.1 porin OmpA -
  BSG21_RS05450 (BSG21_05095) sulA 1074114..1074623 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  BSG21_RS05455 (BSG21_05100) sxy/tfoX 1074842..1075471 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BSG21_RS05460 (BSG21_05105) yccS 1075434..1077596 (-) 2163 WP_000875058.1 YccS family putative transporter -
  BSG21_RS05465 (BSG21_05110) yccF 1077606..1078052 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BSG21_RS05470 (BSG21_05115) helD 1078175..1080229 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=205840 BSG21_RS05455 WP_000839153.1 1074842..1075471(+) (sxy/tfoX) [Escherichia coli strain MRSN346595]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=205840 BSG21_RS05455 WP_000839153.1 1074842..1075471(+) (sxy/tfoX) [Escherichia coli strain MRSN346595]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment