Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CLD04_RS21135 Genome accession   NZ_CP023257
Coordinates   4008753..4009547 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain TLO3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4003753..4014547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS21115 (CLD04_21115) - 4004874..4005557 (-) 684 WP_048654834.1 response regulator transcription factor -
  CLD04_RS21120 (CLD04_21120) - 4005769..4006668 (+) 900 WP_041337903.1 PepSY domain-containing protein -
  CLD04_RS22245 - 4006830..4007054 (+) 225 WP_250614799.1 hypothetical protein -
  CLD04_RS22250 - 4007056..4007322 (+) 267 WP_250614800.1 PepSY domain-containing protein -
  CLD04_RS21760 - 4007319..4007449 (-) 131 Protein_4126 hypothetical protein -
  CLD04_RS21130 (CLD04_21130) htrA 4007469..4008671 (-) 1203 WP_095844106.1 serine protease HtrC Regulator
  CLD04_RS21135 (CLD04_21135) vicX 4008753..4009547 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  CLD04_RS21140 (CLD04_21140) walI 4009569..4010411 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  CLD04_RS21145 (CLD04_21145) walH 4010398..4011765 (-) 1368 WP_041352271.1 WalRK two-component regulatory system regulator WalH -
  CLD04_RS21150 (CLD04_21150) walK 4011755..4013590 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  CLD04_RS21155 (CLD04_21155) walR 4013598..4014305 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=205841 CLD04_RS21135 WP_003226939.1 4008753..4009547(-) (vicX) [Bacillus subtilis strain TLO3]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=205841 CLD04_RS21135 WP_003226939.1 4008753..4009547(-) (vicX) [Bacillus subtilis strain TLO3]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTAATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATTGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAATCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATATGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53