Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | A2U20_RS07320 | Genome accession | NZ_CP018032 |
| Coordinates | 1528693..1529148 (+) | Length | 151 a.a. |
| NCBI ID | WP_021117772.1 | Uniprot ID | K4K080 |
| Organism | Glaesserella parasuis D74 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1523693..1534148
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A2U20_RS07300 (A2U20_07190) | - | 1524083..1525537 (-) | 1455 | WP_021117775.1 | aminoacyl-histidine dipeptidase | - |
| A2U20_RS07305 (A2U20_07195) | gpt | 1525717..1526196 (+) | 480 | WP_005714020.1 | xanthine phosphoribosyltransferase | - |
| A2U20_RS07310 (A2U20_07200) | gmk | 1526450..1527076 (+) | 627 | WP_021117774.1 | guanylate kinase | - |
| A2U20_RS07315 (A2U20_07205) | radA | 1527129..1528505 (-) | 1377 | WP_021117773.1 | DNA repair protein RadA | - |
| A2U20_RS07320 (A2U20_07210) | pilA | 1528693..1529148 (+) | 456 | WP_021117772.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| A2U20_RS07325 (A2U20_07215) | pilB | 1529389..1530774 (+) | 1386 | WP_021117771.1 | GspE/PulE family protein | Machinery gene |
| A2U20_RS07330 (A2U20_07220) | pilC | 1530767..1531963 (+) | 1197 | WP_021117770.1 | type II secretion system F family protein | Machinery gene |
| A2U20_RS07335 (A2U20_07225) | - | 1531960..1532628 (+) | 669 | WP_021117769.1 | prepilin peptidase | - |
| A2U20_RS07340 (A2U20_07230) | dapE | 1532712..1533845 (+) | 1134 | WP_021117768.1 | succinyl-diaminopimelate desuccinylase | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 15865.36 Da Isoelectric Point: 9.0982
>NTDB_id=205183 A2U20_RS07320 WP_021117772.1 1528693..1529148(+) (pilA) [Glaesserella parasuis D74]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTGALTNCTGGSNGV
QANKTDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGQKAP
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNTGALTNCTGGSNGV
QANKTDVADAKYLKSISVAAGVITVAGKGNIDGYGYTMTPTLANNNITWTTSCRGSDTSLFPANFCGQKAP
Nucleotide
Download Length: 456 bp
>NTDB_id=205183 A2U20_RS07320 WP_021117772.1 1528693..1529148(+) (pilA) [Glaesserella parasuis D74]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAGGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGTGGCTGG
TAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAAGCTGTC
GAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGCAGAAAGCACCATAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTGATGATCGTGATCGCCATCATTGC
TATTTTAGCCACGATTGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCTGCACTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACACAGGGGCTTTAACTAACTGTACAGGGGGTTCTAACGGCGTT
CAAGCCAATAAAACCGATGTTGCCGATGCTAAATATCTTAAATCTATTTCCGTCGCTGCAGGTGTAATCACAGTGGCTGG
TAAAGGCAACATTGATGGCTACGGCTACACAATGACCCCGACATTAGCCAATAACAACATCACTTGGACAACAAGCTGTC
GAGGTTCTGACACCAGTTTATTCCCTGCGAATTTCTGTGGGCAGAAAGCACCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
86.184 |
100 |
0.868 |
| pilA | Haemophilus influenzae 86-028NP |
59.184 |
97.351 |
0.576 |
| pilA | Haemophilus influenzae Rd KW20 |
57.143 |
97.351 |
0.556 |
| comP | Acinetobacter baylyi ADP1 |
45.517 |
96.026 |
0.437 |