Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BM525_RS18395 Genome accession   NZ_CP018027
Coordinates   4291322..4292836 (+) Length   504 a.a.
NCBI ID   WP_071953096.1    Uniprot ID   -
Organism   Alteromonas mediterranea strain CP49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4286322..4297836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BM525_RS18380 (BM525_18275) ilvA 4286675..4288222 (-) 1548 WP_071953095.1 threonine ammonia-lyase, biosynthetic -
  BM525_RS18385 (BM525_18280) ilvD 4288222..4290072 (-) 1851 WP_020746891.1 dihydroxy-acid dehydratase -
  BM525_RS18390 (BM525_18285) - 4290501..4291118 (+) 618 WP_024017259.1 trimeric intracellular cation channel family protein -
  BM525_RS18395 (BM525_18290) comM 4291322..4292836 (+) 1515 WP_071953096.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BM525_RS18400 (BM525_18295) ilvY 4292856..4293728 (-) 873 WP_071953097.1 HTH-type transcriptional activator IlvY -
  BM525_RS18405 (BM525_18300) ilvC 4293886..4295364 (+) 1479 WP_012518723.1 ketol-acid reductoisomerase -
  BM525_RS18410 (BM525_18305) - 4295512..4296762 (-) 1251 WP_196770469.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54108.63 Da        Isoelectric Point: 5.8414

>NTDB_id=205133 BM525_RS18395 WP_071953096.1 4291322..4292836(+) (comM) [Alteromonas mediterranea strain CP49]
MGMAVVKTFAGQGVSAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMTAANEDIALVYPGDNDVEAALVSHATRFPAFDL
LSVYEHLTGNKKLAKGQPFTAHSSHNSPTGWDDIIGQEQAKRALIIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLNAERFLTRHLRSPHHTSSAIALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERGNKPD
DSLHDMRERVIAARQKQESRQGKSNGALHAGELADICLLDDADLLFLQAAAKQLNLSMRVFHRTLKVARTIADLEEESAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=205133 BM525_RS18395 WP_071953096.1 4291322..4292836(+) (comM) [Alteromonas mediterranea strain CP49]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGAGTGTCCGCACCAGAGGTAAGTGTTGAAATTCACTTGGCTAA
TGGCCTACCTGCCTTTCAACTGGTCGGTATGGCGGAAACCAGTGTGAAAGAAGCCCGTGAGCGTGTACGCAGCGCGCTCA
TTAACAGTGGTTTTGAGTTTCCAGCCAAACGTATAACCGTTAATTTAGCGCCGGCTGATATCCCAAAGTTCGGCGGCCGG
TTCGACCTTCCTATTGCCGTTGGCATTTTAGCAGCATCGGGTTACATTTCAGATATTAGTCTGCTCAATATTGCCTTTGT
GGGCGAGTTAGCGCTAAACGGTGAGATTAAACCGGTTAACGGGCTTATTCCTGTAGTGATGACGGCAGCGAACGAAGATA
TAGCCCTTGTGTATCCGGGAGATAACGATGTTGAAGCTGCCTTGGTTTCCCACGCCACACGCTTTCCTGCCTTCGATCTG
CTATCTGTGTATGAACATCTTACCGGTAACAAAAAGCTTGCCAAAGGCCAGCCTTTCACTGCTCATTCATCACACAACTC
CCCAACGGGTTGGGATGATATTATCGGTCAAGAGCAGGCTAAACGGGCGTTAATCATTGCCGCAAGTGGTGCGCATAATC
TACTAATGGTGGGGCCTCCCGGCACAGGTAAAAGCCTGCTTGCCAGCCGAATGCTGTCACTATTACCGGATATGAGTGAA
GAGGAAGCCTTGGAAGTCGCTGCCATTCACTCAGTGAAGGGCGAAAAGCTAAATGCTGAACGATTTCTAACCCGCCACCT
GCGCTCCCCCCATCACACAAGTTCTGCGATAGCGCTTACTGGCGGTGGTTCTAACCCTGTGCCAGGAGAAATTTCGCTGG
CCCACAACGGTATTTTGTTTTTAGACGAACTCCCCGAATTTGGCCGAAAAGCGCTGGATGTATTGCGCGAACCGCTTGAA
ACTGGTGACGTGCATTTATCCCGTGCATCAGGAAGTGCAACGTATCCCGCAAATTTTCAACTCGTAGCCGCCATGAACCC
AAGCCCTACTGGAGATATCGACGACAACCGTCTGACACCTCAGCAGCAGCTGAACTACTTAAACCGTTTGTCAGGTCCGC
TGCTAGATAGAATAGATATACAAGTCGAAGTGCCTAGACTGCCAGACTACGACTTGCCAGAGCGGGGTAATAAACCTGAT
GACTCATTGCATGACATGCGGGAAAGGGTGATAGCTGCTCGGCAAAAACAGGAGTCTCGACAAGGCAAGTCCAATGGCGC
TTTACACGCGGGTGAGCTTGCCGACATCTGTTTGCTAGATGACGCAGATCTCCTCTTTTTACAGGCAGCCGCGAAACAAC
TTAATTTATCTATGCGCGTATTTCACCGCACGCTAAAAGTGGCCAGAACCATTGCCGATCTTGAAGAGGAAAGCGCCGTA
TCCAGGGCTCATATCGCAGAAGCACTGGGCTATCGAGCTCTCGATAACCTTATAAAGCAGCTCAGTGCTAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.861

100

0.54
  comM Vibrio campbellii strain DS40M4

53.137

100

0.538
  comM Haemophilus influenzae Rd KW20

51.378

100

0.518
  comM Glaesserella parasuis strain SC1401

51.383

100

0.516
  comM Legionella pneumophila str. Paris

45.565

98.413

0.448
  comM Legionella pneumophila strain ERS1305867

45.565

98.413

0.448
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.435

Multiple sequence alignment