Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Y71_RS26095 Genome accession   NZ_CP018016
Coordinates   5429549..5430082 (-) Length   177 a.a.
NCBI ID   WP_007372442.1    Uniprot ID   -
Organism   Kosakonia radicincitans DSM 16656     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5424549..5435082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y71_RS26070 (Y71_25555) - 5425416..5426180 (-) 765 WP_007372447.1 IclR family transcriptional regulator -
  Y71_RS26075 (Y71_25560) - 5426557..5427252 (+) 696 WP_007372446.1 amino acid ABC transporter permease -
  Y71_RS26080 (Y71_25565) - 5427230..5427997 (+) 768 WP_007372445.1 amino acid ABC transporter ATP-binding protein -
  Y71_RS26085 (Y71_25570) - 5428022..5428795 (+) 774 WP_007372444.1 amino acid ABC transporter substrate-binding protein -
  Y71_RS26090 (Y71_25575) - 5428952..5429488 (+) 537 WP_035943476.1 chorismate mutase -
  Y71_RS26095 (Y71_25580) ssb 5429549..5430082 (-) 534 WP_007372442.1 single-stranded DNA-binding protein SSB1 Machinery gene
  Y71_RS26100 (Y71_25585) uvrA 5430347..5433172 (+) 2826 WP_007372441.1 excinuclease ABC subunit UvrA -
  Y71_RS26105 (Y71_25590) - 5433176..5433544 (-) 369 WP_007372440.1 MmcQ/YjbR family DNA-binding protein -
  Y71_RS26110 (Y71_25595) - 5433547..5433963 (-) 417 WP_007372439.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  Y71_RS26115 (Y71_25600) aphA 5434033..5434743 (-) 711 WP_007372438.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18851.84 Da        Isoelectric Point: 5.2456

>NTDB_id=205062 Y71_RS26095 WP_007372442.1 5429549..5430082(-) (ssb) [Kosakonia radicincitans DSM 16656]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSSA
PAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=205062 Y71_RS26095 WP_007372442.1 5429549..5430082(-) (ssb) [Kosakonia radicincitans DSM 16656]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACAG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGGGCAGGCGGTGGCCAGCAGCAGGGCG
GTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCTTCCGCT
CCGGCACCGTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.774
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.599
  ssb Neisseria meningitidis MC58

46.927

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.475
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.373

Multiple sequence alignment