Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BMW92_RS12420 Genome accession   NZ_CP018005
Coordinates   1905312..1905473 (-) Length   53 a.a.
NCBI ID   WP_232317937.1    Uniprot ID   -
Organism   Coxiella burnetii strain RSA439     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1900312..1910473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMW92_RS12815 - 1900699..1900875 (+) 177 Protein_2006 hypothetical protein -
  BMW92_RS10465 (BMW92_10115) - 1901218..1902648 (-) 1431 WP_010958606.1 amino acid permease -
  BMW92_RS10470 (BMW92_10120) - 1902710..1904005 (-) 1296 WP_010958607.1 ATP-binding protein -
  BMW92_RS10475 (BMW92_10125) comM 1904054..1905310 (-) 1257 WP_017252742.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BMW92_RS12420 comM 1905312..1905473 (-) 162 WP_232317937.1 magnesium chelatase domain-containing protein Machinery gene
  BMW92_RS10480 (BMW92_10130) ubiK 1905480..1905725 (-) 246 WP_010958608.1 ubiquinone biosynthesis accessory factor UbiK -
  BMW92_RS10485 (BMW92_10135) - 1905803..1906753 (+) 951 WP_010958609.1 pyridoxal-phosphate dependent enzyme -
  BMW92_RS10490 (BMW92_10140) - 1906832..1907995 (+) 1164 WP_010958610.1 cystathionine gamma-synthase -
  BMW92_RS10495 (BMW92_10145) - 1908380..1908685 (-) 306 WP_040933893.1 DUF2846 domain-containing protein -
  BMW92_RS10500 (BMW92_10150) - 1908734..1909021 (-) 288 WP_005769804.1 hypothetical protein -
  BMW92_RS10505 (BMW92_10155) - 1909230..1909976 (-) 747 WP_010958611.1 CBU_2028 family Dot/Icm T4SS effector -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 5736.64 Da        Isoelectric Point: 11.8770

>NTDB_id=204961 BMW92_RS12420 WP_232317937.1 1905312..1905473(-) (comM) [Coxiella burnetii strain RSA439]
MSLAIVHSRGSAAVKESRHRVRSAIINSQLEFPVRRITVNLAPTDLPKEGGAV

Nucleotide


Download         Length: 162 bp        

>NTDB_id=204961 BMW92_RS12420 WP_232317937.1 1905312..1905473(-) (comM) [Coxiella burnetii strain RSA439]
ATGTCGCTTGCTATTGTGCATAGTCGCGGCAGCGCGGCTGTTAAGGAAAGCCGTCATCGCGTTCGTAGTGCCATTATCAA
CAGTCAATTGGAATTTCCTGTTCGCCGTATTACTGTCAACTTAGCGCCGACTGATTTGCCCAAGGAAGGGGGGGCGGTTT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.633

100

0.755
  comM Vibrio campbellii strain DS40M4

46.835

100

0.698
  comM Haemophilus influenzae Rd KW20

44.304

100

0.66
  comM Glaesserella parasuis strain SC1401

41.772

100

0.623
  comM Legionella pneumophila strain ERS1305867

76.316

71.698

0.547
  comM Legionella pneumophila str. Paris

76.316

71.698

0.547
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

50

75.472

0.377

Multiple sequence alignment